Detailed view for Smp_167410

Basic information

TDR Targets ID: 295833
Schistosoma mansoni, hypothetical protein
Source Database / ID:  GeneDB

pI: 4.7912 | Length (AA): 359 | MW (Da): 41552 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF07065   D123

Gene Ontology

Mouse over links to read term descriptions.
GO:0007049   cell cycle  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 2 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
8 336 4zgn (A) 2 311 36.00 0 1 1.13203 -0.04
16 283 4zgp (A) 10 259 44.00 0 1 0.918118 0.86

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_129365)

Species Accession Gene Product
Arabidopsis thaliana AT4G05440   protein EMBRYO SAC DEVELOPMENT ARREST 35
Babesia bovis BBOV_III007300   hypothetical protein
Candida albicans CaO19.2721   similar to CDC123
Candida albicans CaO19.10236   potential G1 to S transition factor
Cryptosporidium hominis Chro.60220   hydrolase
Cryptosporidium parvum cgd6_1830   HT-1080/Cdc123p - like protein
Dictyostelium discoideum DDB_G0276129   cell division cycle protein 123
Echinococcus granulosus EgrG_000735400   cell division cycle protein 123
Entamoeba histolytica EHI_128440   cell division cycle protein 123 homolog, putative
Echinococcus multilocularis EmuJ_000735400   cell division cycle protein 123
Giardia lamblia GL50803_7593   Hypothetical protein
Homo sapiens ENSG00000151465   cell division cycle 123
Mus musculus ENSMUSG00000039128   cell division cycle 123
Saccharomyces cerevisiae YLR215C   Cdc123p
Schistosoma japonicum Sjp_0011810   Cell division cycle protein 123 homolog, putative
Schistosoma japonicum Sjp_0313400   Cell division cycle protein 123 homolog, putative
Schistosoma mansoni Smp_167410   hypothetical protein
Schmidtea mediterranea mk4.002090.03  
Theileria parva TP04_0637   hypothetical protein
Trichomonas vaginalis TVAG_384640   cell division cycle protein, putative

Essentiality

Smp_167410 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
YLR215C Saccharomyces cerevisiae inviable yeastgenome
Show/Hide essentiality data references
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier Smp_167410 (Schistosoma mansoni), hypothetical protein
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