Detailed view for TcCLB.510187.210

Basic information

TDR Targets ID: 31027
Trypanosoma cruzi, Plasma-membrane choline transporter, putative
Source Database / ID:  TriTrypDB  GeneDB

pI: 6.2162 | Length (AA): 485 | MW (Da): 53107 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 10

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF04515   Plasma-membrane choline transporter

Gene Ontology

Mouse over links to read term descriptions.
No GO information for this protein.

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 2 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
64 485 4he8 (L) 28 439 15.00 0 0.07 0.944503 -0.01
99 224 4buo (A) 226 360 35.00 0.42 0.56 0.327294 1.62

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_129855)

Species Accession Gene Product
Arabidopsis thaliana AT1G25500   plasma-membrane choline transporter-like protein
Candida albicans CaO19.6077   similar to S. cerevisiae YOR161C
Candida albicans CaO19.13498   similar to S. cerevisiae YOR161C
Dictyostelium discoideum DDB_G0274487   hypothetical protein
Dictyostelium discoideum DDB_G0288717   hypothetical protein
Entamoeba histolytica EHI_101290   hypothetical protein, conserved
Leishmania braziliensis LbrM.35.2450   hypothetical protein, conserved
Leishmania braziliensis LbrM.14.0380   hypothetical protein, conserved
Leishmania donovani LdBPK_362340.1   Plasma-membrane choline transporter, putative
Leishmania donovani LdBPK_140380.1   Plasma-membrane choline transporter, putative
Leishmania infantum LinJ.14.0380   hypothetical protein, conserved
Leishmania infantum LinJ.36.2340   hypothetical protein, conserved
Leishmania major LmjF.36.2210   hypothetical protein, conserved
Leishmania major LmjF.14.0380   hypothetical protein, conserved
Leishmania mexicana LmxM.14.0380   hypothetical protein, conserved
Leishmania mexicana LmxM.36.2210   hypothetical protein, conserved
Oryza sativa 4329774   Os02g0580100
Saccharomyces cerevisiae YOR161C   Pns1p
Trypanosoma brucei gambiense Tbg972.10.8240   hypothetical protein, conserved
Trypanosoma brucei gambiense Tbg972.10.8230   hypothetical protein, conserved
Trypanosoma brucei Tb11.v5.0578   Plasma-membrane choline transporter, putative
Trypanosoma brucei Tb927.10.6730   Plasma-membrane choline transporter, putative
Trypanosoma brucei Tb927.10.6740   Plasma-membrane choline transporter, putative
Trypanosoma congolense TcIL3000_10_5820   hypothetical protein, conserved
Trypanosoma cruzi TcCLB.510187.210   Plasma-membrane choline transporter, putative
Trichomonas vaginalis TVAG_183730   ctl transporter, putative
Trichomonas vaginalis TVAG_306200   protein PNS1, putative
Trichomonas vaginalis TVAG_237280   ctl transporter, putative
Trichomonas vaginalis TVAG_306210   conserved hypothetical protein

Essentiality

TcCLB.510187.210 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb927.10.6720 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (3 days) alsford
Tb927.10.6720 Trypanosoma brucei significant loss of fitness in bloodstream forms (6 days) alsford
Tb927.10.6720 Trypanosoma brucei significant loss of fitness in procyclic forms alsford
Tb927.10.6720 Trypanosoma brucei significant loss of fitness in differentiation of procyclic to bloodstream forms alsford
Show/Hide essentiality data references
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier TcCLB.510187.210 (Trypanosoma cruzi), Plasma-membrane choline transporter, putative
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