pI: 4.8582 |
Length (AA): 390 |
MW (Da): 44732 |
Paralog Number:
0
Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Modbase 3D models:
PDB Structures:
Upregulation Percent | Ranking | Stage | Dataset |
---|---|---|---|
Upper 60-80% percentile | Procyclic, Bloodstream Form. | Siegel TN |
Siegel TN | Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites. |
Ortholog group members (OG5_128797)
Species | Accession | Gene Product |
---|---|---|
Arabidopsis thaliana | AT1G04130 | carboxylate clamp-tetratricopeptide repeat protein |
Babesia bovis | BBOV_III007820 | conserved hypothetical protein |
Brugia malayi | Bm1_35685 | Tetratricopeptide repeat protein 4 |
Candida albicans | CaO19.13473 | component of Hsp90 chaperone complex |
Candida albicans | CaO19.6052 | component of Hsp90 chaperone complex |
Caenorhabditis elegans | CELE_C17G10.2 | Protein C17G10.2 |
Cryptosporidium hominis | Chro.70071 | tetratricopeptide repeat domain 4 |
Cryptosporidium parvum | cgd7_570 | protein with 2 TPR domains |
Dictyostelium discoideum | DDB_G0286253 | tetratricopeptide repeat domain 4 |
Drosophila melanogaster | Dmel_CG3189 | DNA polymerase interacting tpr containing protein of 47kD |
Echinococcus granulosus | EgrG_000683500 | tetratricopeptide repeat protein 4 |
Entamoeba histolytica | EHI_189950 | co-chaperone protein, putative |
Echinococcus multilocularis | EmuJ_000683500 | tetratricopeptide repeat protein 4 |
Homo sapiens | ENSG00000243725 | tetratricopeptide repeat domain 4 |
Leishmania braziliensis | LbrM.33.0740 | hypothetical protein, conserved |
Leishmania donovani | LdBPK_330750.1 | hypothetical protein, conserved |
Leishmania infantum | LinJ.33.0750 | hypothetical protein, conserved |
Leishmania major | LmjF.33.0700 | hypothetical protein, conserved |
Leishmania mexicana | LmxM.32.0700 | hypothetical protein, conserved |
Loa Loa (eye worm) | LOAG_11070 | hypothetical protein |
Mus musculus | ENSMUSG00000025413 | tetratricopeptide repeat domain 4 |
Neospora caninum | NCLIV_002110 | TPR domain-containing protein, putative |
Oryza sativa | 4334120 | Os03g0750100 |
Onchocerca volvulus | OVOC11314 |
|
Saccharomyces cerevisiae | YBR155W | Cns1p |
Schistosoma japonicum | Sjp_0303150 | Tetratricopeptide repeat protein 4, putative |
Schistosoma mansoni | Smp_155480 | heat shock protein 70 |
Schmidtea mediterranea | mk4.000120.17 | Tetratricopeptide repeat protein 4 |
Trypanosoma brucei gambiense | Tbg972.10.13740 | hypothetical protein, conserved |
Trypanosoma brucei | Tb927.10.11380 | hypothetical protein, conserved |
Trypanosoma congolense | TcIL3000_10_9610 | hypothetical protein, conserved |
Trypanosoma cruzi | TcCLB.506577.70 | hypothetical protein, conserved |
Trypanosoma cruzi | TcCLB.507709.70 | hypothetical protein, conserved |
Toxoplasma gondii | TGME49_295730 | tetratricopeptide repeat-containing protein |
Trichomonas vaginalis | TVAG_390540 | heat shock protein 70 (HSP70)-interacting protein, putative |
Trichomonas vaginalis | TVAG_459190 | heat shock protein 70 (HSP70)-interacting protein, putative |
Gene/Ortholog | Organism | Phenotype | Source Study |
---|---|---|---|
Tb927.10.11380 this record | Trypanosoma brucei | no significant loss or gain of fitness in bloodstream forms (3 days) | alsford |
Tb927.10.11380 this record | Trypanosoma brucei | significant gain of fitness in bloodstream forms (6 days) | alsford |
Tb927.10.11380 this record | Trypanosoma brucei | no significant loss or gain of fitness in procyclic forms | alsford |
Tb927.10.11380 this record | Trypanosoma brucei | significant gain of fitness in differentiation of procyclic to bloodstream forms | alsford |
CELE_C17G10.2 | Caenorhabditis elegans | embryonic lethal | wormbase |
CELE_C17G10.2 | Caenorhabditis elegans | larval lethal | wormbase |
CELE_C17G10.2 | Caenorhabditis elegans | slow growth | wormbase |
YBR155W | Saccharomyces cerevisiae | inviable | yeastgenome |
TGME49_295730 | Toxoplasma gondii | Probably essential | sidik |
alsford | High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome | Genome Res 2011, 21:915-924 |
yeastgenome | Systematic deletion of yeast genes | Saccharomyces Genome Database |
nmpdr | Genome-scale essentiality datasets from published studies (M. tuberculosis) | National Microbial Pathogen Data Resource |
keio | Systematic single-gene knock-out mutants of E. coli K12 | The Keio Collection |
wormbase | C. elegans RNAi experiments | WormBase web site, http://www.wormbase.org, release WS170 |
gerdes | Experimental determination and system-level analysis of essential genes in E. coli MG1655 | Gerdes et al., J Bacteriol. 2003 185:5673-84 |
blattner | Systematic mutagenesis of the E. coli (MG1655) genome | J Bacteriol 2004, 186:4921-4930 |
neb | C. elegans RNAi phenotypes | Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs |
shigen | Profiling of E. coli Chromosome (PEC) | National Institute of Genetics, Japan |
Affected Entity | Phenotypic quality | Occurs in | Occurs at | Evidence | Observed in | Drugs/Inhibitors |
---|---|---|---|---|---|---|
cell proliferation (GO:0008283) | normal (PATO:0000461) | bloodstream stage trypomastigotes (PLO:0027) | inferred from RNAi experiment (ECO:0000019) | No drug identifiers listed for this gene. | ||
Annotator: | fernan@iib.unsam.edu.ar. | Comment: | normal cell proliferation (no significant loss or gain of fitness) in bloodstream forms (stage 3 days). | References: | 21363968 | |
cell proliferation (GO:0008283) | increased (PATO:0000470) | bloodstream stage trypomastigotes (PLO:0027) | inferred from RNAi experiment (ECO:0000019) | No drug identifiers listed for this gene. | ||
Annotator: | fernan@iib.unsam.edu.ar. | Comment: | increased cell proliferation (significant gain of fitness) in bloodstream forms (stage 6 days). | References: | 21363968 | |
cell proliferation (GO:0008283) | normal (PATO:0000461) | procyclic (PLO:0034) | inferred from RNAi experiment (ECO:0000019) | No drug identifiers listed for this gene. | ||
Annotator: | fernan@iib.unsam.edu.ar. | Comment: | normal cell proliferation (no significant loss or gain of fitness) in procyclic forms . | References: | 21363968 | |
cell proliferation (GO:0008283) | increased (PATO:0000470) | procyclic (PLO:0034) | inferred from RNAi experiment (ECO:0000019) | No drug identifiers listed for this gene. | ||
Annotator: | fernan@iib.unsam.edu.ar. | Comment: | increased cell proliferation (significant gain of fitness) in differentiation of procyclic to bloodstream forms . | References: | 21363968 |
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.
1 literature reference was collected for this gene.