Detailed view for Tb927.10.3900

Basic information

TDR Targets ID: 321708
Trypanosoma brucei, CAMK/CAMKL family protein kinase, putative
Source Database / ID:  TriTrypDB  GeneDB

pI: 6.016 | Length (AA): 740 | MW (Da): 83219 | Paralog Number: 0

Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 0

Druggability Group : DG4

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00069   Protein kinase domain

Gene Ontology

Mouse over links to read term descriptions.
GO:0005524   ATP binding  
GO:0005509   calcium ion binding  
GO:0004713   protein tyrosine kinase activity  
GO:0004674   protein serine/threonine kinase activity  
GO:0004672   protein kinase activity  
GO:0006468   protein amino acid phosphorylation  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

No model available for this protein in Modbase.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Upper 60-80% percentile Procyclic, Bloodstream Form. Siegel TN
Show/Hide expression data references
  • Siegel TN Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites.

Orthologs

Ortholog group members (OG5_142175)

Species Accession Gene Product
Leishmania braziliensis LbrM.34.0510   hypothetical protein, conserved
Leishmania donovani LdBPK_350480.1   Protein kinase domain containing protein, putative
Leishmania infantum LinJ.35.0480   hypothetical protein, conserved
Leishmania major LmjF.35.0490   hypothetical protein, conserved
Leishmania mexicana LmxM.34.0490   hypothetical protein, conserved
Trypanosoma brucei gambiense Tbg972.10.4850   protein kinase, putative
Trypanosoma brucei Tb927.10.3900   CAMK/CAMKL family protein kinase, putative
Trypanosoma congolense TcIL3000_10_3230   protein kinase, putative
Trypanosoma cruzi TcCLB.503635.10   CAMK/CAMKL family protein kinase, putative
Trypanosoma cruzi TcCLB.511001.60   CAMK/CAMKL family protein kinase, putative

Essentiality

Tb927.10.3900 has direct evidence of essentiality
Gene/Ortholog Organism Phenotype Source Study
Tb927.10.3900 this record Trypanosoma brucei significant gain of fitness in bloodstream forms (3 days) alsford
Tb927.10.3900 this record Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (6 days) alsford
Tb927.10.3900 this record Trypanosoma brucei significant gain of fitness in procyclic forms alsford
Tb927.10.3900 this record Trypanosoma brucei significant gain of fitness in differentiation of procyclic to bloodstream forms alsford
Show/Hide essentiality data references
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930

Phenotypes and Validation (curated)

Annotated phenotypes:

Affected Entity Phenotypic quality Occurs in Occurs at Evidence Observed in Drugs/Inhibitors
cell proliferation (GO:0008283) increased (PATO:0000470) bloodstream stage trypomastigotes (PLO:0027) inferred from RNAi experiment (ECO:0000019) No drug identifiers listed for this gene.
Annotator: fernan@iib.unsam.edu.ar. Comment: increased cell proliferation (significant gain of fitness) in bloodstream forms (stage 3 days). References: 21363968
cell proliferation (GO:0008283) normal (PATO:0000461) bloodstream stage trypomastigotes (PLO:0027) inferred from RNAi experiment (ECO:0000019) No drug identifiers listed for this gene.
Annotator: fernan@iib.unsam.edu.ar. Comment: normal cell proliferation (no significant loss or gain of fitness) in bloodstream forms (stage 6 days). References: 21363968
cell proliferation (GO:0008283) increased (PATO:0000470) procyclic (PLO:0034) inferred from RNAi experiment (ECO:0000019) No drug identifiers listed for this gene.
Annotator: fernan@iib.unsam.edu.ar. Comment: increased cell proliferation (significant gain of fitness) in differentiation of procyclic to bloodstream forms . References: 21363968

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Plasmodium falciparum (isolate 3D7) Calcium-dependent protein kinase 4 528 aa 26.7% 524 aa Compounds References
Bos taurus Glycogen synthase kinase-3 beta splice variant X1 419 aa 26.1% 345 aa Compounds References
Bos taurus Calmodulin 149 aa 20.8% 173 aa Compounds References
Rattus norvegicus Glycogen synthase kinase-3 beta 420 aa 26.1% 345 aa Compounds References
Xenopus laevis Aurora kinase B-A 361 aa 26.8% 299 aa Compounds References
Plasmodium falciparum (isolate 3D7) Cell division control protein 2 homolog 288 aa 25.9% 301 aa Compounds References
Rattus norvegicus Serine/threonine-protein kinase pim-3 326 aa 27.6% 290 aa Compounds References
Rattus norvegicus Cell division protein kinase 5 292 aa 25.6% 309 aa Compounds References
Sus scrofa Casein kinase I isoform alpha 125 aa 29.9% 117 aa Compounds References
Sus scrofa Glycogen synthase kinase 3 beta 420 aa 26.1% 345 aa Compounds References
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0066 0.3101 0
0.0027 1 0.5
0.0033 1 0.5
0.0092 1 0.5
0.0067 0.5 0.5
0.0081 0.5 0.5
0.0011 1 0.5
0.0069 0.3067 1
0.0037 1 0.5
0.0064 0.3377 0
0.0061 0.6883 0.5304
0.0012 0.5 0.5
0.0059 1 1
0.0059 1 1
0.0039 0.5 0.5
0.0012 0.5 0.5
0.0039 0.9485 0.5
0.0032 0.5 0.5
0.0032 0.5 0.5
0.0016 0.5 0.5
0.0007 0.5 0.5
0.0088 0.4477 0.5
0.0042 0.5 0.5
0.0059 1 1
0.0029 0.5 0.5
0.0012 0.5 0.5
0.0056 1 0.5
0.0022 0.5 0.5
0.0018 0.5 0.5
0.0093 0.8828 0
0.0063 0.7244 0.2543
0.0008 0.5 0.5
0.0091 1 0.5
0.0003 0.5 0.5
0.0081 1 0.5
0.0039 0.5 0.5
0.0007 0.5 0.5
0.0062 0.6935 0
0.0063 1 0.5
0.0016 0.5 0.5
0.0007 0.5 0.5
0.0036 0.5 0.5
0.0033 0.5 0.5
0.0023 0.5 0.5
0.0098 0.3242 0.2614
0.0004 0.5 0.5
0.0026 0.5 0.5

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

1 literature reference was collected for this gene.

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User comments

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Gene identifier Tb927.10.3900 (Trypanosoma brucei), CAMK/CAMKL family protein kinase, putative
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