Detailed view for Tb927.10.7180

Basic information

TDR Targets ID: 321742
Trypanosoma brucei, cysteine-rich, acidic integral membrane protein precursor
Source Database / ID:  TriTrypDB  GeneDB

pI: 2.4939 | Length (AA): 1148 | MW (Da): 122366 | Paralog Number: 0

Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 1

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF07016   Cysteine-rich acidic integral membrane protein precursor

Gene Ontology

Mouse over links to read term descriptions.
GO:0016021   integral to membrane  
GO:0005524   ATP binding  
GO:0006810   transport  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

No model available for this protein in Modbase.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Upper 80-100% percentile Procyclic. Siegel TN
Upregulation Percent Ranking Stage Dataset
Upper 60-80% percentile Bloodstream Form. Siegel TN
Show/Hide expression data references
  • Siegel TN Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites.

Orthologs

Ortholog group members (OG5_134751)

Species Accession Gene Product
Brugia malayi Bm1_14695   hypothetical protein
Brugia malayi Bm1_14710   hypothetical protein
Homo sapiens 102725096   proline-rich protein 2-like
Mus musculus 102632202   predicted gene, 30342
Mus musculus 102639553   predicted gene, 35839
Schmidtea mediterranea mk4.026580.00  
Schmidtea mediterranea mk4.011414.00  
Schmidtea mediterranea mk4.002169.02  
Trypanosoma brucei gambiense Tbg972.10.8800  
Trypanosoma brucei Tb927.10.7180   cysteine-rich, acidic integral membrane protein precursor
Trypanosoma congolense TcIL3000_0_12570   cysteine-rich, acidic integral membrane protein precursor
Trypanosoma congolense TcIL3000_0_57060   cysteine-rich, acidic integral membrane protein precursor
Trypanosoma congolense TcIL3000_0_38200   cysteine-rich, acidic integral membrane protein precursor
Trypanosoma congolense TcIL3000_0_12560   cysteine-rich, acidic integral membrane protein precursor
Trypanosoma congolense TcIL3000_0_46610   cysteine-rich, acidic integral membrane protein precursor
Trypanosoma congolense TcIL3000_0_46580   cysteine-rich, acidic integral membrane protein precursor
Trypanosoma congolense TcIL3000_0_46590   cysteine-rich, acidic integral membrane protein precursor
Trypanosoma congolense TcIL3000_0_47450   cysteine-rich, acidic integral membrane protein precursor
Trypanosoma congolense TcIL3000_0_47440   cysteine-rich, acidic integral membrane protein precursor
Trypanosoma congolense TcIL3000_0_46600   cysteine-rich, acidic integral membrane protein precursor
Trypanosoma cruzi TcCLB.509005.90   hypothetical protein, conserved

Essentiality

Tb927.10.7180 has direct evidence of essentiality
Gene/Ortholog Organism Phenotype Source Study
Tb927.10.7180 this record Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (3 days) alsford
Tb927.10.7180 this record Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (6 days) alsford
Tb927.10.7180 this record Trypanosoma brucei significant gain of fitness in procyclic forms alsford
Tb927.10.7180 this record Trypanosoma brucei no significant loss or gain of fitness in differentiation of procyclic to bloodstream forms alsford
Show/Hide essentiality data references
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170

Phenotypes and Validation (curated)

Annotated phenotypes:

Affected Entity Phenotypic quality Occurs in Occurs at Evidence Observed in Drugs/Inhibitors
cell proliferation (GO:0008283) normal (PATO:0000461) bloodstream stage trypomastigotes (PLO:0027) inferred from RNAi experiment (ECO:0000019) No drug identifiers listed for this gene.
Annotator: fernan@iib.unsam.edu.ar. Comment: normal cell proliferation (no significant loss or gain of fitness) in bloodstream forms (stage 6 days). References: 21363968
cell proliferation (GO:0008283) increased (PATO:0000470) procyclic (PLO:0034) inferred from RNAi experiment (ECO:0000019) No drug identifiers listed for this gene.
Annotator: fernan@iib.unsam.edu.ar. Comment: increased cell proliferation (significant gain of fitness) in procyclic forms . References: 21363968
cell proliferation (GO:0008283) normal (PATO:0000461) procyclic (PLO:0034) inferred from RNAi experiment (ECO:0000019) No drug identifiers listed for this gene.
Annotator: fernan@iib.unsam.edu.ar. Comment: normal cell proliferation (no significant loss or gain of fitness) in differentiation of procyclic to bloodstream forms . References: 21363968

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

1 literature reference was collected for this gene.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier Tb927.10.7180 (Trypanosoma brucei), cysteine-rich, acidic integral membrane protein precursor
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