Detailed view for TcCLB.511693.130

Basic information

TDR Targets ID: 33565
Trypanosoma cruzi, hypothetical protein
Source Database / ID:  TriTrypDB  GeneDB

pI: 6.7449 | Length (AA): 383 | MW (Da): 43587 | Paralog Number: 1

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 8

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF04193   PQ loop repeat

Gene Ontology

Mouse over links to read term descriptions.
No GO information for this protein.

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 2 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
62 354 1m56 (A) 133 447 10.00 0.00000000069 0.01 0.81 -0.79
38 118 5a5i (A) 390 476 33.00 0.47 0.13 0.345688 1.04

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Mid 40-60% percentile epimastigote, metacyclic. Smircich P
Show/Hide expression data references
  • Smircich P Ribosome profiling reveals translation control as a key mechanism generating differential gene expression in Trypanosoma cruzi.

Orthologs

Ortholog group members (OG5_129926)

Species Accession Gene Product
Arabidopsis thaliana AT5G40670   PQ-loop repeat family protein / transmembrane family protein
Caenorhabditis elegans CELE_C41C4.7   Protein CTNS-1, isoform B
Dictyostelium discoideum DDB_G0279445   hypothetical protein
Drosophila melanogaster Dmel_CG17119   CG17119 gene product from transcript CG17119-RC
Echinococcus granulosus EgrG_000164700   cystinosin
Echinococcus granulosus EgrG_000164600   cystinosin
Echinococcus multilocularis EmuJ_000164700   cystinosin
Echinococcus multilocularis EmuJ_000164600   cystinosin
Homo sapiens ENSG00000040531   cystinosin, lysosomal cystine transporter
Loa Loa (eye worm) LOAG_15005   hypothetical protein
Loa Loa (eye worm) LOAG_14920   hypothetical protein
Mus musculus ENSMUSG00000005949   cystinosis, nephropathic
Oryza sativa 4351977   Os12g0278700
Saccharomyces cerevisiae YCR075C   Ers1p
Schistosoma japonicum Sjp_0302570   Cystinosin homolog, putative
Schistosoma mansoni Smp_169870   cystinosin
Schmidtea mediterranea mk4.008070.00   Cystinosin
Schmidtea mediterranea mk4.001064.00   Cystinosin
Schmidtea mediterranea mk4.008167.00   Cystinosin homolog
Trypanosoma cruzi TcCLB.511693.130   hypothetical protein
Trypanosoma cruzi TcCLB.503559.70   cystinosin, putative

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier TcCLB.511693.130 (Trypanosoma cruzi), hypothetical protein
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