Detailed view for cgd1_1490

Basic information

TDR Targets ID: 378476
Cryptosporidium parvum, NEK2 protein, putative
Source Database / ID: 

pI: 9.0639 | Length (AA): 555 | MW (Da): 63995 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00069   Protein kinase domain

Gene Ontology

Mouse over links to read term descriptions.
GO:0005524   ATP binding  
GO:0004672   protein kinase activity  
GO:0006468   protein amino acid phosphorylation  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 3 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
12 436 5t6a (A) 47 461 25.00 0 1 0.868066 0.13
13 313 4b9d (A) 1 270 38.00 0 1 0.721942 -0.59
14 302 2w5a (A) 6 271 52.00 0 1 0.850321 -0.49

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_129446)

Species Accession Gene Product
Babesia bovis BBOV_III010080   protein kinase domain containing protein
Candida albicans CaO19.5325   likely protein kinase similar to S. cerevisiae KIN3 (YAR018C)
Candida albicans CaO19.12785   likely protein kinase similar to S. cerevisiae KIN3 (YAR018C)
Cryptosporidium hominis Chro.10172   NEK2 protein
Cryptosporidium parvum cgd1_1490   NEK2 protein, putative
Dictyostelium discoideum DDB_G0270814   NEK family protein kinase
Drosophila melanogaster Dmel_CG17256   CG17256 gene product from transcript CG17256-RA
Giardia lamblia GL50803_5375   Kinase, NEK
Giardia lamblia GL50803_95593   Kinase, NEK
Giardia lamblia GL50803_11311   Kinase, NEK
Homo sapiens ENSG00000117650   NIMA-related kinase 2
Mus musculus ENSMUSG00000026622   NIMA (never in mitosis gene a)-related expressed kinase 2
Neospora caninum NCLIV_043340   MGC81305 protein, related
Plasmodium berghei PBANKA_1443000   NIMA related kinase 1, putative
Plasmodium falciparum PF3D7_1228300   NIMA related kinase 1
Plasmodium knowlesi PKNH_1447700   NIMA related kinase 1, putative
Plasmodium vivax PVX_124045   NIMA-related protein kinase (Pfnek-1), putative
Plasmodium yoelii PY04005   NIMA-related protein kinase
Saccharomyces cerevisiae YAR018C   Kin3p
Schmidtea mediterranea mk4.011291.01  
Toxoplasma gondii TGME49_292140   NIMA-related protein kinase NIMA1
Theileria parva TP02_0139   NIMA-related protein kinase, putative
Trichomonas vaginalis TVAG_025740   AGC family protein kinase
Trichomonas vaginalis TVAG_050700   STE family protein kinase

Essentiality

cgd1_1490 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
PBANKA_1443000 Plasmodium berghei Essential plasmo
TGME49_292140 Toxoplasma gondii Probably essential sidik
Show/Hide essentiality data references
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Plasmodium falciparum NIMA related kinase 1 Compounds References
Homo sapiens NIMA-related kinase 2 Compounds References
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Xenopus laevis Aurora kinase B-A 361 aa 25.7% 311 aa Compounds References
Xenopus laevis Aurora kinase B-B 368 aa 25.6% 309 aa Compounds References
Homo sapiens Cyclin-dependent kinase 1/cyclin B1 297 aa 33.3% 240 aa Compounds References
Plasmodium falciparum (isolate 3D7) Cell division control protein 2 homolog 288 aa 33.1% 236 aa Compounds References
Oryctolagus cuniculus Cyclin-dependent kinase 4 189 aa 30.5% 200 aa Compounds References
Patiria pectinifera Cdc2 300 aa 29.8% 319 aa Compounds References
Rattus norvegicus Cell division protein kinase 5 292 aa 29.7% 249 aa Compounds References
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier cgd1_1490 (Cryptosporidium parvum), NEK2 protein, putative
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