Detailed view for LbrM.23.0700

Basic information

TDR Targets ID: 429778
Leishmania braziliensis, ubiquitin-activating enzyme e1, putative
Source Database / ID: 

pI: 6.0168 | Length (AA): 1045 | MW (Da): 115589 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00899   ThiF family
PF09358   Ubiquitin fold domain
PF10585   Ubiquitin-activating enzyme active site

Gene Ontology

Mouse over links to read term descriptions.
GO:0008641   small protein activating enzyme activity  
GO:0006464   protein modification process  

Metabolic Pathways

Ubiquitin mediated proteolysis (KEGG)

Structural information

Modbase 3D models:

There are 4 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
3 1042 4ii2 (A) 14 1011 37.00 0 1 1.29302 0.21
5 168 1zfn (B) 2 172 17.00 0.00000002 0.99 0.446038 -0.71
6 1042 5l6h (A) 13 1023 36.00 0 1 1.31644 0.25
593 848 1z7l (A) 629 889 38.00 0 1 0.762076 -0.58

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_127070)

Species Accession Gene Product
Arabidopsis thaliana AT2G30110   ubiquitin-activating enzyme E1 1
Arabidopsis thaliana AT5G06460   ubiquitin-activating enzyme E1 2
Babesia bovis BBOV_II007710   ubiquitin-activating enzyme E1, putative
Brugia malayi Bm1_50525   ube1-prov protein
Candida albicans CaO19.7438   ubiquitin-activating enzyme
Caenorhabditis elegans CELE_C47E12.5   Protein UBA-1, isoform B
Cryptosporidium hominis Chro.40260   ubiquitin-activating enzyme e1
Cryptosporidium parvum cgd4_2300   ubiquitin-activating enzyme E1 (UBA)
Dictyostelium discoideum DDB_G0270272   ubiquitin activating enzyme E1
Dictyostelium discoideum DDB_G0277047   hypothetical protein
Drosophila melanogaster Dmel_CG1782   Ubiquitin activating enzyme 1
Echinococcus granulosus EgrG_000491100   ubiquitin modifier activating enzyme 6
Echinococcus granulosus EgrG_000711500   ubiquitin modifier activating enzyme 1
Entamoeba histolytica EHI_038690   ubiquitin-activating enzyme E1 1, putative
Entamoeba histolytica EHI_020270   ubiquitin-activating enzyme, putative
Echinococcus multilocularis EmuJ_000491100   ubiquitin modifier activating enzyme 6
Echinococcus multilocularis EmuJ_000711500   ubiquitin modifier activating enzyme 1
Giardia lamblia GL50803_10661   Ubiquitin-conjugating enzyme E1
Homo sapiens ENSG00000130985   ubiquitin-like modifier activating enzyme 1
Homo sapiens ENSG00000182179   ubiquitin-like modifier activating enzyme 7
Homo sapiens 55236   ubiquitin-like modifier activating enzyme 6
Leishmania braziliensis LbrM.23.0700   ubiquitin-activating enzyme e1, putative
Leishmania donovani LdBPK_230710.1   ubiquitin-activating enzyme E1, putative
Leishmania infantum LinJ.23.0710   ubiquitin-activating enzyme e1, putative
Leishmania major LmjF.23.0550   ubiquitin-activating enzyme e1, putative
Leishmania mexicana LmxM.23.0550   ubiquitin-activating enzyme e1, putative
Loa Loa (eye worm) LOAG_03774   ube1-prov protein
Mus musculus ENSMUSG00000001924   ubiquitin-like modifier activating enzyme 1
Mus musculus ENSMUSG00000032596   ubiquitin-like modifier activating enzyme 7
Mus musculus ENSMUSG00000035898   ubiquitin-like modifier activating enzyme 6
Mus musculus ENSMUSG00000069053   ubiquitin-activating enzyme, Chr Y
Neospora caninum NCLIV_042500   Ubiquitin-activating enzyme E1, related
Oryza sativa 4344380   Os07g0692900
Oryza sativa 4332529   Os03g0294900
Oryza sativa 9267214   Os03g0613100
Oryza sativa 4349557   Os11g0106400
Oryza sativa 9271171   Os12g0105950
Plasmodium berghei PBANKA_1440700   ubiquitin-activating enzyme E1, putative
Plasmodium falciparum PF3D7_1225800   ubiquitin-activating enzyme E1
Plasmodium knowlesi PKNH_1445200   ubiquitin-activating enzyme E1, putative
Plasmodium yoelii PY01879   Uba1 gene product-related
Saccharomyces cerevisiae YKL210W   E1 ubiquitin-activating protein UBA1
Schistosoma japonicum Sjp_0065510   ko:K03178 ubiquitin-activating enzyme E1, putative
Schistosoma japonicum Sjp_0063670   Ubiquitin-like modifier-activating enzyme 6, putative
Schistosoma mansoni Smp_162630.2   ubiquitin-activating enzyme E1
Schmidtea mediterranea mk4.026123.02  
Schmidtea mediterranea mk4.000467.00   Putative ubiquitin-activating enzyme e1
Schmidtea mediterranea mk4.000925.11   Putative ubiquitin-activating enzyme e1
Schmidtea mediterranea mk4.026123.00   Putative clathrin coat associated protein ap-50
Schmidtea mediterranea mk4.018920.02   Putative clathrin coat associated protein ap-50
Schmidtea mediterranea mk4.000102.06   Ubiquitin-like modifier-activating enzyme 6
Schmidtea mediterranea mk4.018920.01  
Schmidtea mediterranea mk4.018920.00  
Schmidtea mediterranea mk4.004540.00  
Trypanosoma brucei gambiense Tbg972.8.2140   ubiquitin-activating enzyme e1, putative
Trypanosoma brucei Tb927.8.2640   ubiquitin-activating enzyme E1, putative
Trypanosoma congolense TcIL3000_8_2480   ubiquitin-activating enzyme E1, putative
Trypanosoma cruzi TcCLB.508043.30   ubiquitin-activating enzyme E1, putative
Trypanosoma cruzi TcCLB.504427.250   ubiquitin-activating enzyme E1, putative
Theileria parva TP02_0689   ubiquitin-protein ligase, putative
Trichomonas vaginalis TVAG_300590   ubiquitin-activating enzyme E1, putative
Trichomonas vaginalis TVAG_006110   ubiquitin-activating enzyme E1, putative
Trichomonas vaginalis TVAG_090800   ubiquitin-activating enzyme E1c, putative

Essentiality

LbrM.23.0700 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb927.8.2640 Trypanosoma brucei significant loss of fitness in bloodstream forms (3 days) alsford
Tb927.8.2640 Trypanosoma brucei significant loss of fitness in bloodstream forms (6 days) alsford
Tb927.8.2640 Trypanosoma brucei significant gain of fitness in procyclic forms alsford
Tb927.8.2640 Trypanosoma brucei no significant loss or gain of fitness in differentiation of procyclic to bloodstream forms alsford
CELE_C47E12.5 Caenorhabditis elegans adult lethal wormbase
CELE_C47E12.5 Caenorhabditis elegans embryonic lethal wormbase
CELE_C47E12.5 Caenorhabditis elegans slow growth wormbase
CELE_C47E12.5 Caenorhabditis elegans sterile wormbase
YKL210W Saccharomyces cerevisiae inviable yeastgenome
PBANKA_1440700 Plasmodium berghei Dispensable plasmo
Show/Hide essentiality data references
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Homo sapiens ubiquitin-like modifier activating enzyme 7 Compounds References
Homo sapiens ubiquitin-like modifier activating enzyme 6 Compounds References
Homo sapiens ubiquitin-like modifier activating enzyme 1 Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier LbrM.23.0700 (Leishmania braziliensis), ubiquitin-activating enzyme e1, putative
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