Detailed view for LbrM.20.3970

Basic information

TDR Targets ID: 431339
Leishmania braziliensis, quinonoid dihydropteridine reductase
Source Database / ID: 

pI: 6.9581 | Length (AA): 229 | MW (Da): 23424 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00106   short chain dehydrogenase

Gene Ontology

Mouse over links to read term descriptions.
GO:0016491   oxidoreductase activity  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 3 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
2 228 3orf (A) 3 229 37.00 0 1 1.48187 -0.86
2 228 1dhr (A) 7 236 42.00 0 1 1.54527 -0.76
4 228 1ooe (A) 6 234 46.00 0 1 1.53313 -0.76

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_131023)

Species Accession Gene Product
Brugia malayi Bm1_25735   dihydropteridine reductase-like
Caenorhabditis elegans CELE_T03F6.1   Protein QDPR-1
Dictyostelium discoideum DDB_G0272684   dihydropteridine reductase
Drosophila melanogaster Dmel_CG4665   Dihydropteridine reductase
Echinococcus granulosus EgrG_000819200   NADP binding domain
Echinococcus multilocularis EmuJ_000819200   NAD(P) binding domain
Homo sapiens ENSG00000151552   quinoid dihydropteridine reductase
Leishmania braziliensis LbrM.20.3970   quinonoid dihydropteridine reductase
Leishmania donovani LdBPK_044270.1   hypothetical protein, conserved
Leishmania infantum LinJ.34.4270   quinonoid dihydropteridine reductase
Leishmania major LmjF.34.4390   quinonoid dihydropteridine reductase
Leishmania major LmjF.34.4330   quinonoid dihydropteridine reductase
Leishmania major LmjF.34.4450   quinonoid dihydropteridine reductase
Leishmania major LmjF.34.4480   quinonoid dihydropteridine reductase
Leishmania major LmjF.34.4420   quinonoid dihydropteridine reductase
Leishmania major LmjF.34.4510   quinonoid dihydropteridine reductase
Leishmania major LmjF.34.4360   quinonoid dihydropteridine reductase
Leishmania mexicana LmxM.33.4330   quinonoid dihydropteridine reductase
Loa Loa (eye worm) LOAG_02547   dihydropteridine reductase-PC
Mus musculus ENSMUSG00000015806   quinoid dihydropteridine reductase
Neospora caninum NCLIV_014630   Novel protein similar to quinoid dihydropteridine reductase (QDPR, zgc:112405), related
Schistosoma japonicum Sjp_0002580   ko:K00357 dihydropteridine reductase [EC1.5.1.34], putative
Schistosoma mansoni Smp_086210   dihydropteridine reductase
Schmidtea mediterranea mk4.020580.00  
Schmidtea mediterranea mk4.019996.00  
Schmidtea mediterranea mk4.001430.06   Dihydropteridine reductase
Trypanosoma cruzi TcCLB.510689.20   quinonoid dihydropteridine reductase, putative
Toxoplasma gondii TGME49_285750   6,7-dihydropteridine reductase

Essentiality

LbrM.20.3970 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
TGME49_285750 Toxoplasma gondii Essentiality uncertain sidik
Show/Hide essentiality data references
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Homo sapiens quinoid dihydropteridine reductase Compounds References
Rattus norvegicus Dihydropteridine reductase Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier LbrM.20.3970 (Leishmania braziliensis), quinonoid dihydropteridine reductase
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