Detailed view for TcCLB.507897.40

Basic information

TDR Targets ID: 44054
Trypanosoma cruzi, acetyl-CoA carboxylase, putative
Source Database / ID:  TriTrypDB  GeneDB

pI: 6.1102 | Length (AA): 320 | MW (Da): 36078 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG4

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF01039   Carboxyl transferase domain

Gene Ontology

Mouse over links to read term descriptions.
GO:0016874   ligase activity  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 14 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
1 194 1uyv (B) 1927 2190 33.00 0 0.76 0.79 -0.19
2 289 1uyr (A) 1931 2218 35.00 0 1 1 0.45
3 249 1uyr (A) 1933 2191 41.00 0 1 1.15 -0.16
4 155 5ewu (A) 1213 1374 28.00 0.85 0.48 0.474012 -0.7
47 795 5csk (B) 1441 2193 39.00 0 1 1.28013 0.06
84 833 5cte (B) 1482 2233 41.00 0 1 1.30428 0.03
96 777 2x24 (A) 28 710 44.00 0 1 1.21971 -0.01
486 658 2f9i (C) 89 240 15.00 0 0.28 0.157322 0.35
639 859 5cwo (A) 7 217 15.00 0.069 0.06 0.360931 -0.25
724 870 5cwp (A) 12 167 18.00 0.75 0.29 0.391972 -0.88
3 308 4asi (A) 2064 2375 35.00 0 1 1.20125 0.46
3 283 5cte (B) 1933 2230 38.00 0 1 1.28212 0.27
12 233 2x24 (A) 472 710 46.00 0 1 1.12245 0.28
14 127 1uyv (A) 1945 2142 56.00 0 1 0.91055 -0.23

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_189822)

Species Accession Gene Product
Oryza sativa 4348450   Os10g0363300
Trypanosoma cruzi TcCLB.507897.40   acetyl-CoA carboxylase, putative

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Zea mays Acetyl-CoA carboxylase 109 aa 59.4% 101 aa Compounds References
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier TcCLB.507897.40 (Trypanosoma cruzi), acetyl-CoA carboxylase, putative
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