Detailed view for TcCLB.511267.30

Basic information

TDR Targets ID: 47922
Trypanosoma cruzi, cholinephosphate cytidylyltransferase A, putative
Source Database / ID:  TriTrypDB  GeneDB

pI: 8.5205 | Length (AA): 506 | MW (Da): 56440 | Paralog Number: 1

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 5

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF01066   CDP-alcohol phosphatidyltransferase
PF01467   Cytidylyltransferase-like

Gene Ontology

Mouse over links to read term descriptions.
GO:0016780   phosphotransferase activity, for other substituted phosphate groups  
GO:0016020   membrane  
GO:0016779   nucleotidyltransferase activity  
GO:0003824   catalytic activity  
GO:0009058   biosynthetic process  
GO:0008654   phospholipid biosynthetic process  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 3 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
352 448 2b7l (A) 1 96 25.00 0.000067 1 0.62 -1.03
355 505 1mrz (A) 2 164 20.00 0 1 0.42 0.18
316 504 4mvc (A) 43 282 31.00 0 1 0.717418 0.17

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_144443)

Species Accession Gene Product
Leishmania braziliensis LbrM.18.1140   cholinephosphate cytidylyltransferase A, putative
Leishmania donovani LdBPK_181310.1   cholinephosphate cytidylyltransferase A, putative
Leishmania infantum LinJ.18.1310   cholinephosphate cytidylyltransferase A, putative
Leishmania major LmjF.18.1330   cholinephosphate cytidylyltransferase A, putative
Leishmania mexicana LmxM.18.1330   cholinephosphate cytidylyltransferase A, putative
Trypanosoma brucei gambiense Tbg972.10.15450   cholinephosphate cytidylyltransferase A, putative
Trypanosoma brucei Tb927.10.12810   cholinephosphate cytidylyltransferase A, putative
Trypanosoma congolense TcIL3000_10_10900   cholinephosphate cytidylyltransferase A, putative
Trypanosoma cruzi TcCLB.511267.30   cholinephosphate cytidylyltransferase A, putative
Trypanosoma cruzi TcCLB.509805.220   cholinephosphate cytidylyltransferase A, putative

Essentiality

TcCLB.511267.30 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb927.10.12810 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (3 days) alsford
Tb927.10.12810 Trypanosoma brucei significant loss of fitness in bloodstream forms (6 days) alsford
Tb927.10.12810 Trypanosoma brucei no significant loss or gain of fitness in procyclic forms alsford
Tb927.10.12810 Trypanosoma brucei significant loss of fitness in differentiation of procyclic to bloodstream forms alsford
Show/Hide essentiality data references
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier TcCLB.511267.30 (Trypanosoma cruzi), cholinephosphate cytidylyltransferase A, putative
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