Detailed view for PF3D7_1205800

Basic information

TDR Targets ID: 5106
Plasmodium falciparum, high mobility group protein B3, putative
Source Database / ID:  PlasmoDB   |   GeneDB   |   MPMP

pI: 6.6543 | Length (AA): 2284 | MW (Da): 267019 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF15963   Myb DNA-binding like

Gene Ontology

Mouse over links to read term descriptions.
GO:0001026   GO:TFIIIB-type transcription factor activity  

GO:0000126   transcription factor TFIIIB complex  
GO:0005634   nucleus  
GO:0003677   DNA binding  
GO:0006383   transcription from RNA polymerase III promoter  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 6 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
291 394 1ux6 (A) 823 926 34.00 0.17 0.01 0.419034 -1.26
335 432 3ult (A) 6 106 27.00 0.82 0.02 0.444407 -1.73
443 660 2ab5 (A) 305 509 29.00 0.46 0.02 0.00494658 1.79
892 954 2rtu (A) 10 72 27.00 0.63 0.72 0.443083 -0.87
1339 2023 2vse (A) 118 860 22.00 0.0000018 0.87 0.244412 1.69
1963 2278 4o87 (A) 31 293 30.00 0.029 0.68 0.0568538 1.36

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Upper 80-100% percentile intra-erythrocytic - 0 hs, intra-erythrocytic - 8 hs, intra-erythrocytic - 16 hs, merozoite, Sporozoite. Otto TD PlasmoDB Zanghi G
Upregulation Percent Ranking Stage Dataset
Upper 60-80% percentile intra-erythrocytic - 24 hs, intra-erythrocytic - 32 hs, sporozoite, early ring, early schizont, early trophozoite, late ring, late schizont, late trophozoite, Oocyst, Ring, Female Gametocyte, Male Gametocyte. Otto TD PlasmoDB Zanghi G Lasonder E
Upregulation Percent Ranking Stage Dataset
Mid 40-60% percentile intra-erythrocytic - 40 hs, intra-erythrocytic - 48 hs, gametocyte. Otto TD PlasmoDB
Show/Hide expression data references
  • PlasmoDB Data on upregulation of P. falciparum genes in different life cycle stages, combined from several microarray experiments available in PlasmoDB
  • Lasonder E Integrated transcriptomic and proteomic analyses of P. falciparum gametocytes. Molecular insight into sex-specific processes and translational repression.
  • Zanghi G A Specific PfEMP1 Is Expressed in P. falciparum Sporozoites and Plays a Role in Hepatocyte Infection.
  • Otto TD New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq.

Orthologs

Ortholog group members (OG5_142461)

Species Accession Gene Product
Cryptosporidium hominis Chro.40147   hypothetical protein
Cryptosporidium parvum cgd4_1270   transcription factor TFIIIB, SANT domain
Plasmodium berghei PBANKA_0604500   high mobility group protein B3, putative
Plasmodium falciparum PF3D7_1205800   high mobility group protein B3, putative
Plasmodium knowlesi PKNH_1305500   high mobility group protein B3, putative
Plasmodium vivax PVX_084325   high mobility group protein B3, putative
Plasmodium yoelii PY06049   ERYTHROCYTE MEMBRANE PROTEIN PFEMP3
Theileria parva TP03_0451   hypothetical protein

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Druggability index (range: 0 to 1): 0.5

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier PF3D7_1205800 (Plasmodium falciparum), high mobility group protein B3, putative
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