Detailed view for TcCLB.511301.50

Basic information

TDR Targets ID: 54487
Trypanosoma cruzi, hypothetical protein, conserved
Source Database / ID:  TriTrypDB  GeneDB

pI: 8.4753 | Length (AA): 316 | MW (Da): 35303 | Paralog Number: 3

Signal peptide: Y | GPI Anchor: N | Predicted trans-membrane segments: 8

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF03151   Triose-phosphate Transporter family

Gene Ontology

Mouse over links to read term descriptions.
No GO information for this protein.

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 3 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
76 265 2b2h (A) 14 200 10.00 0.0000025 0.01 0.79 -1.07
6 290 5y78 (A) 105 400 17.00 0 0.27 1.0846 -0.56
56 263 5xpd (A) 11 213 28.00 0.024 0.08 0.353328 1.75

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_129243)

Species Accession Gene Product
Arabidopsis thaliana AT2G28315   nucleotide/sugar transporter-like protein
Arabidopsis thaliana AT1G06890   nucleotide/sugar transporter family protein
Arabidopsis thaliana AT2G30460   Nucleotide/sugar transporter family protein
Cryptosporidium parvum cgd4_3110   10 transmembrane domain protein, possible translocator
Homo sapiens 55508   solute carrier family 35, member E3
Leishmania braziliensis LbrM.19.1770   hypothetical protein, conserved
Leishmania donovani LdBPK_191540.1   Triose-phosphate Transporter family, putative
Leishmania donovani LdBPK_302680.1   Triose-phosphate Transporter family, putative
Leishmania infantum LinJ.30.2680   hypothetical protein, conserved
Leishmania infantum LinJ.19.1540   hypothetical protein, conserved
Leishmania major LmjF.19.1490   hypothetical protein, conserved
Leishmania major LmjF.30.2680   hypothetical protein, conserved
Leishmania major LmjF.19.1510   hypothetical protein, conserved
Leishmania mexicana LmxM.19.1490   hypothetical protein, conserved
Leishmania mexicana LmxM.29.2680   hypothetical protein, conserved
Mus musculus ENSMUSG00000060181   solute carrier family 35, member E3
Oryza sativa 4325183   Os01g0167500
Oryza sativa 4348916   Os10g0479700
Oryza sativa 4337925   Os05g0168700
Oryza sativa 4330044   Os02g0628200
Trypanosoma brucei gambiense Tbg972.6.3740   hypothetical protein, conserved
Trypanosoma brucei Tb927.6.3960   Nucleotide sugar transporter 4
Trypanosoma congolense TcIL3000_6_3380   Triose-phosphate Transporter family, putative
Trypanosoma congolense TcIL3000_0_02330   Triose-phosphate Transporter family, putative
Trypanosoma cruzi TcCLB.511353.30   hypothetical protein, conserved
Trypanosoma cruzi TcCLB.511517.150   Triose-phosphate Transporter family, putative
Trypanosoma cruzi TcCLB.511301.50   hypothetical protein, conserved
Trypanosoma cruzi TcCLB.511737.70   Triose-phosphate Transporter family, putative
Trichomonas vaginalis TVAG_147630   conserved hypothetical protein
Trichomonas vaginalis TVAG_291580   conserved hypothetical protein
Trichomonas vaginalis TVAG_476380   conserved hypothetical protein
Trichomonas vaginalis TVAG_461060   conserved hypothetical protein
Trichomonas vaginalis TVAG_140070   conserved hypothetical protein
Trichomonas vaginalis TVAG_153420   conserved hypothetical protein
Trichomonas vaginalis TVAG_031760   protein C22F8.04 in chromosome I, putative
Trichomonas vaginalis TVAG_108280   conserved hypothetical protein

Essentiality

TcCLB.511301.50 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb927.6.3960 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (3 days) alsford
Tb927.6.3960 Trypanosoma brucei significant gain of fitness in bloodstream forms (6 days) alsford
Tb927.6.3960 Trypanosoma brucei significant gain of fitness in procyclic forms alsford
Tb927.6.3960 Trypanosoma brucei significant gain of fitness in differentiation of procyclic to bloodstream forms alsford
Show/Hide essentiality data references
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Druggability index (range: 0 to 1): 0.1

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier TcCLB.511301.50 (Trypanosoma cruzi), hypothetical protein, conserved
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