Detailed view for EgrG_000858900

Basic information

TDR Targets ID: 578864
Echinococcus granulosus, diaphanous
Source Database / ID:  GeneDB

pI: 6.4415 | Length (AA): 1083 | MW (Da): 120054 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF02181   Formin Homology 2 Domain
PF06367   Diaphanous FH3 Domain
PF06371   Diaphanous GTPase-binding Domain

Gene Ontology

Mouse over links to read term descriptions.
GO:0007015   actin filament organization  
GO:0005488   binding  
GO:0003779   actin binding  
GO:0017048   Rho GTPase binding  
GO:0016043   cellular component organization and biogenesis  
GO:0007049   cell cycle  
GO:0030036   actin cytoskeleton organization and biogenesis  

Metabolic Pathways

Regulation of actin cytoskeleton (KEGG)

Structural information

Modbase 3D models:

There are 11 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
41 352 3dad (A) 37 331 17.00 0.000000048 0.96 0.431789 0.02
86 430 1z2c (D) 83 436 29.00 0 1 0.60326 0.15
87 353 4yc7 (B) 32 373 28.00 0 1 0.485737 -0.6
89 428 3eg5 (B) 86 434 34.00 0 1 0.639143 -0.16
132 471 2bnx (A) 135 475 34.00 0 1 0.639043 -0.12
522 563 1nay (A) 107 144 58.00 0.0027 0.05 0.476881 -0.8
572 1038 3o4x (E) 747 1198 39.00 0 1 0.76591 0.25
581 1007 2j1d (G) 604 1024 26.00 0 1 0.605975 -0.02
666 983 4eah (A) 613 938 29.00 0 1 0.681729 -0.55
693 802 5cwh (A) 47 153 30.00 0.83 0.97 0.63167 -1.6
974 1047 5hmo (A) 814 887 15.00 0.45 0 0.324029 -1.56

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_127406)

Species Accession Gene Product
Arabidopsis thaliana AT5G58160   formin-like protein 13
Arabidopsis thaliana AT2G25050   actin-binding FH2 protein
Arabidopsis thaliana AT3G32400   Actin-binding FH2/DRF autoregulatory protein
Brugia malayi Bm1_05395   Formin Homology 2 Domain containing protein
Brugia malayi Bm1_09450   Formin Homology 2 Domain containing protein
Candida albicans CaO19.12393   involved in cytoskeletal control
Candida albicans CaO19.4927   involved in cytoskeletal control
Candida albicans CaO19.7537   cytoskeletal regulatory protein binding
Caenorhabditis elegans CELE_F11H8.4   Protein CYK-1, isoform A
Dictyostelium discoideum DDB_G0279607   actin binding protein
Dictyostelium discoideum DDB_G0289763   actin binding protein
Dictyostelium discoideum DDB_G0282297   actin binding protein
Drosophila melanogaster Dmel_CG1768   diaphanous
Echinococcus granulosus EgrG_000858900   diaphanous
Entamoeba histolytica EHI_118260   formin homology 2 family protein
Entamoeba histolytica EHI_125300   diaphanous protein, putative
Entamoeba histolytica EHI_190990   diaphanous protein, putative
Entamoeba histolytica EHI_192460   formin homology 2 family protein
Echinococcus multilocularis EmuJ_000858900   diaphanous
Homo sapiens ENSG00000139734   diaphanous-related formin 3
Homo sapiens ENSG00000131504   diaphanous-related formin 1
Homo sapiens ENSG00000147202   diaphanous-related formin 2
Loa Loa (eye worm) LOAG_13493   hypothetical protein
Loa Loa (eye worm) LOAG_06905   hypothetical protein
Mus musculus ENSMUSG00000024456   diaphanous homolog 1 (Drosophila)
Mus musculus ENSMUSG00000034480   diaphanous homolog 2 (Drosophila)
Mus musculus ENSMUSG00000022021   diaphanous homolog 3 (Drosophila)
Mycobacterium tuberculosis Rv1233c   Conserved hypothetical membrane protein
Oryza sativa 9269435   Os08g0280200
Oryza sativa 4343793   Os07g0596300
Saccharomyces cerevisiae YNL271C   Bni1p
Schistosoma japonicum Sjp_0022610   ko:K05740 diaphanous 1, putative
Schistosoma mansoni Smp_068720   diaphanous
Schmidtea mediterranea mk4.000037.09   Protein diaphanous
Schmidtea mediterranea mk4.025887.00  
Schmidtea mediterranea mk4.007976.01  
Schmidtea mediterranea mk4.002029.07  
Schmidtea mediterranea mk4.001070.16   Protein diaphanous
Schmidtea mediterranea mk4.000037.10   Protein diaphanous
Schmidtea mediterranea mk4.000017.25  
Trichomonas vaginalis TVAG_348260   formin 1,2/cappuccino, putative
Trichomonas vaginalis TVAG_029100   formin domain-containing protein, putative

Essentiality

EgrG_000858900 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
mtu1254 Mycobacterium tuberculosis non-essential nmpdr
CELE_F11H8.4 Caenorhabditis elegans adult lethal wormbase
CELE_F11H8.4 Caenorhabditis elegans embryonic lethal wormbase
CELE_F11H8.4 Caenorhabditis elegans larval arrest wormbase
CELE_F11H8.4 Caenorhabditis elegans larval lethal wormbase
CELE_F11H8.4 Caenorhabditis elegans sterile wormbase
YNL271C Saccharomyces cerevisiae inviable yeastgenome
Show/Hide essentiality data references
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier EgrG_000858900 (Echinococcus granulosus), diaphanous
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