Detailed view for EgrG_000529000

Basic information

TDR Targets ID: 579975
Echinococcus granulosus, zinc finger protein 541
Source Database / ID:  GeneDB

pI: 8.2369 | Length (AA): 1562 | MW (Da): 168622 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00096   Zinc finger, C2H2 type
PF01448   ELM2 domain
PF13912   C2H2-type zinc finger

Gene Ontology

Mouse over links to read term descriptions.
GO:0003677   DNA binding  
GO:0003676   nucleic acid binding  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 7 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
58 139 2yt9 (A) 360 443 37.00 0.00000000049 1 0.421097 0.55
60 134 1ubd (C) 296 373 44.00 0.000000027 1 0.428615 0.73
81 139 2drp (A) 104 164 24.00 0 0.36 0.194472 -0.32
85 117 2em3 (A) 10 42 45.00 0.018 0.75 0.510727 0.09
409 440 1sp2 (A) 2 31 20.00 0.002 0.04 0.278087 -1.41
1322 1366 2cu7 (A) 9 49 22.00 0.19 0.61 0.288409 -0.96
1325 1378 2yqk (A) 12 62 35.00 0.0000056 0.72 0.513171 -1.34

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_152251)

Species Accession Gene Product
Echinococcus granulosus EgrG_000529000   zinc finger protein 541
Echinococcus multilocularis EmuJ_000529000   zinc finger protein 541
Schistosoma japonicum Sjp_0007500   Zinc finger protein 541, putative
Schistosoma japonicum Sjp_0128010   hypothetical protein
Schistosoma japonicum Sjp_0123200   expressed protein
Schistosoma japonicum Sjp_0007460   expressed protein
Schistosoma mansoni Smp_160460   zinc finger protein
Schmidtea mediterranea mk4.014142.00  
Schmidtea mediterranea mk4.017314.00  

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier EgrG_000529000 (Echinococcus granulosus), zinc finger protein 541
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