Detailed view for EgrG_000600900

Basic information

TDR Targets ID: 592276
Echinococcus granulosus, DDB1 and CUL4 associated factor 11
Source Database / ID:  GeneDB

pI: 6.2328 | Length (AA): 384 | MW (Da): 42821 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

No Pfam domain information for this protein.

Gene Ontology

Mouse over links to read term descriptions.
GO:0005515   protein binding  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 2 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
43 116 5n1a (A) 196 274 29.00 0.26 0.93 0.639008 -0.83
109 197 4aow (A) 32 95 47.00 0.015 0.54 0.283071 0.73

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_130523)

Species Accession Gene Product
Arabidopsis thaliana AT4G03020   WD40 domain-containing protein
Brugia malayi Bm1_48035   WD-repeat protein 23
Caenorhabditis elegans CELE_D2030.9   Protein WDR-23, isoform B
Dictyostelium discoideum DDB_G0291832   WD40 repeat-containing protein
Drosophila melanogaster Dmel_CG9945   CG9945 gene product from transcript CG9945-RA
Echinococcus granulosus EgrG_000600900   DDB1 and CUL4 associated factor 11
Echinococcus multilocularis EmuJ_000600900   DDB1 and CUL4 associated factor 11
Homo sapiens ENSG00000100897   DDB1 and CUL4 associated factor 11
Loa Loa (eye worm) LOAG_13948   hypothetical protein
Loa Loa (eye worm) LOAG_09767   WD-repeat protein 23
Mus musculus ENSMUSG00000022214   DDB1 and CUL4 associated factor 11
Oryza sativa 4337782   Os05g0144100
Oryza sativa 4338763   Os05g0407200
Oryza sativa 9266898   Os01g0383700
Schistosoma japonicum Sjp_0210780   IPR001680,WD-40 repeat,domain-containing
Schistosoma japonicum Sjp_0059390   Uncharacterized WD repeat-containing protein D2030.9, putative
Schistosoma mansoni Smp_171670   hypothetical protein

Essentiality

EgrG_000600900 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
CELE_D2030.9 Caenorhabditis elegans slow growth wormbase
Show/Hide essentiality data references
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier EgrG_000600900 (Echinococcus granulosus), DDB1 and CUL4 associated factor 11
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