Detailed view for CaO19.6844

Basic information

TDR Targets ID: 657986
Candida albicans, isocitrate lyase capable of functionally substituting for S. cerevisiae ICL1 (YER065C)
Source Database / ID:  KEGG  

pI: 7.2319 | Length (AA): 550 | MW (Da): 61422 | Paralog Number: 1

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00463   Isocitrate lyase family

Gene Ontology

Mouse over links to read term descriptions.
GO:0004451   isocitrate lyase activity  
GO:0003824   catalytic activity  
GO:0019752   carboxylic acid metabolic process  
GO:0008152   metabolic process  

Structural information

Modbase 3D models:

No model available for this protein in Modbase.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_129572)

Species Accession Gene Product
Arabidopsis thaliana AT3G21720   isocitrate lyase
Candida albicans CaO19.14134   isocitrate lyase capable of functionally substituting for S. cerevisiae ICL1 (YER065C)
Candida albicans CaO19.6844   isocitrate lyase capable of functionally substituting for S. cerevisiae ICL1 (YER065C)
Dictyostelium discoideum DDB_G0273017   isocitrate lyase
Escherichia coli b4015   isocitrate lyase
Mycobacterium leprae ML1985c   PROBABLE ISOCITRATE LYASE AceA (ISOCITRASE) (ISOCITRATASE) (ICL)
Mycobacterium tuberculosis Rv0467   Isocitrate lyase Icl (isocitrase) (isocitratase)
Mycobacterium tuberculosis Rv1915   Probable isocitrate lyase AceAa [first part] (isocitrase) (isocitratase) (Icl)
Mycobacterium tuberculosis Rv1916   Probable isocitrate lyase AceAb [second part] (isocitrase) (isocitratase) (Icl)
Mycobacterium ulcerans MUL_4536   isocitrate lyase Icl
Mycobacterium ulcerans MUL_2943   isocitrate lyase AceAb
Oryza sativa 4343441   Os07g0529000
Saccharomyces cerevisiae YPR006C   methylisocitrate lyase ICL2
Saccharomyces cerevisiae YER065C   isocitrate lyase 1

Essentiality

CaO19.6844 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
mtu1946 Mycobacterium tuberculosis non-essential nmpdr
b4015 Escherichia coli non-essential goodall
Show/Hide essentiality data references
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

Compound Source Reference
ChEMBL23 References
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Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Magnaporthe oryzae (strain 70-15 / FGSC 8958) (Rice blast fungus)(Pyricularia oryzae) Isocitrate lyase Compounds References
Mycobacterium tuberculosis Probable isocitrate lyase AceAa [first part] (isocitrase) (isocitratase) (Icl) Compounds References
Mycobacterium tuberculosis Isocitrate lyase Icl (isocitrase) (isocitratase) Compounds References
Mycobacterium tuberculosis Probable isocitrate lyase AceAb [second part] (isocitrase) (isocitratase) (Icl) Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

  • ChEMBL
  • Inhibition of Candida albicans isocitrate lyase
  • ChEMBL
  • Inhibition of Candida albicans isocitrate lyase
  • ChEMBL
  • Inhibition of Candida albicans isocitrate lyase
  • ChEMBL
  • Inhibition of candida albicans isocitrate lyase
  • ChEMBL
  • Inhibition of Candida albicans isocitrate lyase
  • ChEMBL
  • Inhibition of Candida albicans ATCC 10231 isocitrate lyase
  • ChEMBL
  • Inhibition of Candida albicans isocitrate lyase
  • ChEMBL
  • Inhibition of Candida albicans ICL assessed as formation of glyoxylate phenylhydrazone by spectrophotometry
  • ChEMBL
  • Inhibition of Candida albicans isocitrate lyase
  • ChEMBL
  • Inhibition of Candida albicans isocitrate lyase after 30 mins
  • ChEMBL
  • Inhibition of Candida albicans recombinant ICL assessed as formation of glyoxylate phenylhydrazone by spectrophotometry
  • ChEMBL
  • Inhibition of Candida albicans ATCC 10231 isocitrate lyase by spectrophotometric analysis
  • ChEMBL
  • Inhibition of recombinant Candida albicans ATCC 10231 ICL using phenylhydrazine and isocitrate as substrate assessed as formation of glyoxylate phenylhydrazone after 30 mins by spectrophotometric analysis
  • ChEMBL
  • Inhibition of Candida albicans ATCC 10231 isocitrate lyase
  • ChEMBL
  • Inhibition of Candida albicans isocitrate lyase assessed as reduction in glyoxylate phenylhydrazone formation using phenylhydrazine and isocitrate incubated for 30 mins by spectrophotometry

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

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User comments

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Gene identifier CaO19.6844 (Candida albicans), isocitrate lyase capable of functionally substituting for S. cerevisiae ICL1 (YER065C)
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