Detailed view for EHI_001880

Basic information

TDR Targets ID: 800942
Entamoeba histolytica, hypothetical protein, conserved
Source Database / ID:  AmoebaDB  

pI: 8.8246 | Length (AA): 315 | MW (Da): 37047 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00704   Glycosyl hydrolases family 18

Gene Ontology

Mouse over links to read term descriptions.
GO:0005975   carbohydrate metabolic process  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 3 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
15 315 3bxw (B) 24 371 23.00 0 1 1.11576 0.07
18 314 3bxw (B) 27 370 26.00 0 1 1.13596 -0.27
19 314 3bxw (B) 28 370 33.00 0 1 1.17428 -0.23

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Upper 60-80% percentile Trophozoite, Rahman HM-1 IMSS Trophozoite. Hon CC
Show/Hide expression data references
  • Hon CC Transcriptomics of virulent and avirulent strains

Orthologs

Ortholog group members (OG5_131418)

Species Accession Gene Product
Arabidopsis thaliana AT4G01040   glycosyl hydrolase family protein
Brugia malayi Bm1_33145   hypothetical protein
Caenorhabditis elegans CELE_C44C1.2   Protein C44C1.2
Dictyostelium discoideum DDB_G0290417   chitinase domain-containing protein 1
Drosophila melanogaster Dmel_CG8460   CG8460 gene product from transcript CG8460-RA
Echinococcus granulosus EgrG_000909300   Glycoside hydrolase chitinase domain containing protein 1
Entamoeba histolytica EHI_001880   hypothetical protein, conserved
Echinococcus multilocularis EmuJ_000909300   Glycoside hydrolase, chitinase domain containing protein 1
Homo sapiens ENSG00000177830   chitinase domain containing 1
Loa Loa (eye worm) LOAG_02670   hypothetical protein
Loa Loa (eye worm) LOAG_02671   hypothetical protein
Mus musculus ENSMUSG00000025512   chitinase domain containing 1
Oryza sativa 4326620   Os01g0619800
Onchocerca volvulus OVOC2935   Putative chitinase
Schistosoma japonicum Sjp_0076830   Chitinase domain-containing protein 1 precursor, putative
Schistosoma mansoni Smp_148450   chitinase
Schmidtea mediterranea mk4.013529.01  
Trichomonas vaginalis TVAG_027980   chitinase, putative

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier EHI_001880 (Entamoeba histolytica), hypothetical protein, conserved
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