Detailed view for GL50803_97130

Basic information

TDR Targets ID: 806176
Giardia lamblia, Kinase, NEK
Source Database / ID:  GiardiaDB  

pI: 6.207 | Length (AA): 697 | MW (Da): 77193 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00069   Protein kinase domain
PF12796   Ankyrin repeats (3 copies)

Gene Ontology

Mouse over links to read term descriptions.
GO:0005524   ATP binding  
GO:0005515   protein binding  
GO:0004672   protein kinase activity  
GO:0006468   protein amino acid phosphorylation  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 13 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
1 300 2ptk (A) 241 528 21.00 0 1 0.522716 0.15
1 291 2src (A) 238 518 14.00 0 0.93 0.533804 0.23
2 283 3p1a (A) 89 351 23.00 0 1 0.585891 -0.04
30 403 5iso (C) 16 437 18.00 0 1 0.639885 0.64
107 286 3biz (A) 382 564 31.00 0.0035 1 0.53205 -0.84
376 673 5et1 (A) 3 313 29.00 0.00000029 1 0.644347 0.33
376 693 4rlv (A) 2267 2591 28.00 0.00000000012 1 0.696041 0.2
378 442 2zgd (A) 27 93 48.00 0.0096 1 0.567057 -0.04
406 685 5lem (A) 13 323 33.00 0 1 0.614522 0.37
439 525 1n0q (A) 2 92 34.00 0 1 0.608121 -1.18
470 551 4bes (A) 392 484 41.00 0.0045 0.98 0.378447 0.77
603 686 5eid (A) 251 338 29.00 0.00015 1 0.536816 -0.89
631 690 1oy3 (D) 204 266 17.00 0.061 0.6 0.286383 -0.43

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_202878)

Species Accession Gene Product
Giardia lamblia GL50803_97130   Kinase, NEK

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Rattus norvegicus Jak1 protein 210 aa 25.0% 188 aa Compounds References
Plasmodium falciparum (isolate 3D7) Cell division control protein 2 homolog 288 aa 23.3% 287 aa Compounds References
Oryctolagus cuniculus Cyclin-dependent kinase 4 189 aa 30.2% 179 aa Compounds References
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0016 0.5 0.5
0.0042 0.5 0.5
0.0098 0.3242 0.2373
0.0012 0.5 0.5
0.0039 0.9485 0.5
0.0037 1 0.5
0.0063 1 0.5
0.0066 0.3101 0.5
0.0003 0.5 0.5
0.0016 0.5 0.5
0.0039 0.5 0.5
0.0018 0.5 0.5
0.0033 1 0.5
0.0007 0.5 0.5
0.0032 0.5 0.5
0.0092 1 0.5
0.0063 0.7244 0
0.0088 0.4477 0.5
0.0061 0.6883 1
0.0026 0.5 0.5
0.0033 0.5 0.5
0.0081 1 0.5
0.0007 0.5 0.5
0.0062 0.6935 0.5
0.0067 0.5 0.5
0.0059 1 1
0.0007 0.5 0.5
0.0059 1 1
0.0093 0.8828 0.5
0.0064 0.3377 0.5
0.0027 1 0.5
0.0011 1 0.5
0.0036 0.5 0.5
0.0012 0.5 0.5
0.0022 0.5 0.5
0.0056 1 0.5
0.0081 0.5 0.5
0.0029 0.5 0.5
0.0012 0.5 0.5
0.0091 1 0.5
0.0059 1 1
0.0023 0.5 0.5
0.0004 0.5 0.5
0.0069 0.3067 0.5
0.0032 0.5 0.5
0.0039 0.5 0.5
0.0008 0.5 0.5

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier GL50803_97130 (Giardia lamblia), Kinase, NEK
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