Detailed view for GL50803_91220

Basic information

TDR Targets ID: 811650
Giardia lamblia, Kinase, NEK
Source Database / ID:  GiardiaDB  

pI: 7.5918 | Length (AA): 1144 | MW (Da): 124267 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00069   Protein kinase domain
PF12796   Ankyrin repeats (3 copies)

Gene Ontology

Mouse over links to read term descriptions.
GO:0005524   ATP binding  
GO:0005515   protein binding  
GO:0004672   protein kinase activity  
GO:0006468   protein amino acid phosphorylation  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 9 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
9 404 1koa (A) 5940 6330 22.00 0 1 0.491354 0.8
255 547 5g4x (A) 22 335 18.00 0 1 0.335319 1.06
320 375 2xen (A) 43 100 41.00 0.0035 1 0.615351 -1.08
370 569 1uoh (A) 5 212 23.00 0 1 0.449025 -0.19
373 535 1dcq (A) 315 489 29.00 0.041 1 0.296883 0.64
406 1143 4rlv (A) 1607 2775 23.00 0 1 0.814305 0.66
938 992 4bsz (B) 52 114 44.00 0.44 1 0.454477 -0.28
1032 1115 2xen (A) 13 100 35.00 0 1 0.531327 -1.26
1063 1128 3deo (A) 159 227 36.00 0.22 1 0.564092 -1.08

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_201464)

Species Accession Gene Product
Giardia lamblia GL50803_91220   Kinase, NEK
Schmidtea mediterranea mk4.001022.06  

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Rattus norvegicus MAP kinase p38 alpha 360 aa 26.1% 326 aa Compounds References
Rattus norvegicus Serine/threonine-protein kinase pim-3 326 aa 21.9% 311 aa Compounds References
Homo sapiens Cyclin-dependent kinase 1/cyclin B1 297 aa 28.2% 298 aa Compounds References
Plasmodium falciparum (isolate 3D7) Cell division control protein 2 homolog 288 aa 26.2% 305 aa Compounds References
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0088 0.4477 0.5
0.0016 0.5 0.5
0.0007 0.5 0.5
0.0032 0.5 0.5
0.0039 0.9485 0.5
0.0032 0.5 0.5
0.0012 0.5 0.5
0.0059 1 1
0.0039 0.5 0.5
0.0059 1 1
0.0012 0.5 0.5
0.0061 0.6883 1
0.0064 0.3377 0.5
0.0069 0.3067 0.5
0.0037 1 0.5
0.0081 0.5 0.5
0.0067 0.5 0.5
0.0011 1 0.5
0.0033 1 0.5
0.0092 1 0.5
0.0066 0.3101 0.5
0.0027 1 0.5
0.0004 0.5 0.5
0.0026 0.5 0.5
0.0098 0.3242 0.2373
0.0023 0.5 0.5
0.0007 0.5 0.5
0.0036 0.5 0.5
0.0033 0.5 0.5
0.0063 1 0.5
0.0016 0.5 0.5
0.0039 0.5 0.5
0.0007 0.5 0.5
0.0062 0.6935 0.5
0.0003 0.5 0.5
0.0081 1 0.5
0.0093 0.8828 0.5
0.0063 0.7244 0
0.0008 0.5 0.5
0.0091 1 0.5
0.0022 0.5 0.5
0.0018 0.5 0.5
0.0012 0.5 0.5
0.0056 1 0.5
0.0029 0.5 0.5
0.0059 1 1
0.0042 0.5 0.5

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier GL50803_91220 (Giardia lamblia), Kinase, NEK
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