Detailed view for PBANKA_1305200
Basic information
Plasmodium berghei, serine/threonine protein kinase, putative
Source Database / ID:
pI: 9.5005 |
Length (AA): 2166 |
MW (Da): 254655 |
Paralog Number:
0
Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Network
Pfam domains
Gene Ontology
GO:0004672 protein kinase activity
GO:0006468 protein amino acid phosphorylation
Metabolic Pathways
Structural information
Modbase 3D models:
There are 6 models calculated for this protein. More info on
these models, including the
models themselves is available at:
Modbase
| Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
|---|---|---|---|---|---|---|---|---|---|
| 2 | 390 | 3pvu (A) | 76 | 435 | 28.00 | 0.00000000016 | 1 | 0.345194 | 0.61 |
| 9 | 465 | 5uvc (A) | 74 | 534 | 23.00 | 0 | 1 | 0.181888 | 0.63 |
| 105 | 402 | 4d2w (A) | 2 | 263 | 40.00 | 0 | 1 | 0.380181 | 0.14 |
| 117 | 404 | 2w5a (A) | 6 | 273 | 32.00 | 0.00000000007 | 1 | 0.336564 | 0.23 |
| 581 | 1613 | 5xwp (A) | 22 | 1049 | 23.00 | 0.000071 | 1 | 0.313816 | 1.37 |
| 902 | 1207 | 4z8n (A) | 161 | 446 | 12.00 | 0 | 0.12 | 0.0811742 | -0.52 |
Help me make sense of these data.
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
Expression
| Upregulation Percent | Ranking | Stage | Dataset |
|---|---|---|---|
| Upper 80-100% percentile | Gametocyte, 22 hs Schizont, Male gametocyte. | Otto TD Yeoh LM |
| Upregulation Percent | Ranking | Stage | Dataset |
|---|---|---|---|
| Mid 40-60% percentile | 4 hs Ring. | Otto TD |
| Upregulation Percent | Ranking | Stage | Dataset |
|---|---|---|---|
| Lower 20-40% percentile | 16 hs Trophozoite, Female gametocyte. | Otto TD Yeoh LM |
| Upregulation Percent | Ranking | Stage | Dataset |
|---|---|---|---|
| Lower 0-20% percentile | Ookinete, Erthyrocytic stages. | Otto TD Yeoh LM |
-
Otto TD A comprehensive evaluation of rodent malaria parasite genomes and gene expression. -
Yeoh LM Comparative transcriptomics of female and male gametocytes in Plasmodium berghei and the evolution of sex in alveolates.
Orthologs
Ortholog group members (OG5_137359)
| Species | Accession | Gene Product |
|---|---|---|
| Babesia bovis | BBOV_III003210 | protein kinase domain containing protein |
| Candida albicans | CaO19.2781 | probable Ser Thr protein kinase, similar to RCK2 |
| Candida albicans | CaO19.10297 | probable Ser Thr protein kinase, similar to RCK2 |
| Plasmodium berghei | PBANKA_1305200 | serine/threonine protein kinase, putative |
| Plasmodium falciparum | PF3D7_1441300 | serine/threonine protein kinase, putative |
| Plasmodium knowlesi | PKNH_1241000 | serine/threonine protein kinase, putative |
| Plasmodium vivax | PVX_118425 | serine/threonine protein kinase, putative |
| Plasmodium yoelii | PY05864 | hypothetical protein |
| Plasmodium yoelii | PY05330 | Protein kinase domain, putative |
| Theileria parva | TP04_0122 | serine/threonine protein kinase, putative |
Essentiality
| Gene/Ortholog | Organism | Phenotype | Source Study |
|---|---|---|---|
| PBANKA_1305200 this record | Plasmodium berghei | Dispensable | plasmo |
-
keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection -
neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs -
gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84 -
shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan -
alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924 -
wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170 -
blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930 -
nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource -
yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
Phenotypes and Validation (curated)
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.
Annotated validation
Associated compounds / Druggability
Known modulators for this target
Predicted associations
By orthology with druggable targets
By sequence similarity to non orthologous druggable targets
Obtained from network model
Assayability
Assay information
Reagent availability
Bibliographic References