Detailed view for PVX_099257

Basic information

TDR Targets ID: 830906
Plasmodium vivax, RNA-binding protein musashi, putative
Source Database / ID:  PlasmoDB 

pI: 8.7851 | Length (AA): 339 | MW (Da): 39418 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00076   RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Gene Ontology

Mouse over links to read term descriptions.
GO:0003676   nucleic acid binding  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 4 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
86 255 4bs2 (A) 103 269 28.00 0.0000002 1 0.795575 -0.23
88 157 4c7q (A) 7 79 36.00 0.000081 1 0.82659 -2.09
171 228 2jrs (A) 28 87 47.00 0.0000093 1 0.833191 -1.31
172 220 2kn4 (A) 73 122 43.00 0.019 1 0.736643 -0.91

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Upper 80-100% percentile intraerythrocytic - 12 hs, intraerythrocytic - 36 hs, intraerythrocytic - 40 hs, intraerythrocytic - 48 hs. Zhu L
Upregulation Percent Ranking Stage Dataset
Upper 60-80% percentile intraerythrocytic - 6 hs, intraerythrocytic - 18 hs, intraerythrocytic - 24 hs, intraerythrocytic - 30 hs. Zhu L
Show/Hide expression data references
  • Zhu L New insights into the Plasmodium vivax transcriptome using RNA-Seq.

Orthologs

Ortholog group members (OG5_133793)

Species Accession Gene Product
Arabidopsis thaliana AT3G56860   UBP1-associated protein 2A
Arabidopsis thaliana AT2G41060   RNA recognition motif-containing protein
Arabidopsis thaliana AT3G15010   RNA recognition motif-containing protein
Cryptosporidium hominis Chro.70495   UBP1 interacting protein 2a
Cryptosporidium hominis Chro.50160   RNA-binding protein
Cryptosporidium parvum cgd7_4480   T8M16_190 RRM protein of possible plant origin
Cryptosporidium parvum cgd5_2200   T8M16_190-plant like protein with RRM domain
Entamoeba histolytica EHI_121780   enhancer binding protein-1
Oryza sativa 4326641   Os01g0614500
Oryza sativa 9269235   Os10g0362150
Oryza sativa 4326212   Os01g0265800
Oryza sativa 4337147   Os04g0636900
Plasmodium berghei PBANKA_0817700   RNA-binding protein musashi, putative
Plasmodium falciparum PF3D7_0916700   RNA-binding protein musashi, putative
Plasmodium knowlesi PKNH_0714700   RNA-binding protein musashi, putative
Plasmodium vivax PVX_099257   RNA-binding protein musashi, putative
Plasmodium yoelii PY06963   UBP1 interacting protein 2a

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier PVX_099257 (Plasmodium vivax), RNA-binding protein musashi, putative
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