pI: 10.6572 |
Length (AA): 129 |
MW (Da): 14324 |
Paralog Number:
0
Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Modbase 3D models:
There is 1 model calculated for this protein. More info on
this model, including the
model itself is available at:
Modbase
Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
---|---|---|---|---|---|---|---|---|---|
27 | 122 | 1n91 (A) | 6 | 100 | 28.00 | 0 | 0.99 | 1.12269 | -0.5 |
Help me make sense of these data.
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
Ortholog group members (OG5_129681)
Species | Accession | Gene Product |
---|---|---|
Arabidopsis thaliana | AT5G63440 | CACTIN-interacting protein |
Arabidopsis thaliana | AT1G49170 | hypothetical protein |
Caenorhabditis elegans | CELE_W01A8.2 | Protein W01A8.2 |
Chlamydia trachomatis | CT_388 | hypothetical protein |
Dictyostelium discoideum | DDB_G0280783 | hypothetical protein |
Drosophila melanogaster | Dmel_CG14966 | CG14966 gene product from transcript CG14966-RA |
Escherichia coli | b2953 | UPF0235 family protein |
Entamoeba histolytica | EHI_188890 | hypothetical protein, conserved |
Homo sapiens | ENSG00000169609 | chromosome 15 open reading frame 40 |
Loa Loa (eye worm) | LOAG_08565 | hypothetical protein |
Mus musculus | ENSMUSG00000025102 | RIKEN cDNA 3110040N11 gene |
Oryza sativa | 4337470 | Os04g0686300 |
Onchocerca volvulus | OVOC1302 |
|
Plasmodium berghei | PBANKA_1320600 | conserved protein, unknown function |
Plasmodium falciparum | PF3D7_1456900 | conserved protein, unknown function |
Plasmodium knowlesi | PKNH_1224900 | conserved protein, unknown function |
Plasmodium vivax | PVX_117620 | conserved protein, unknown function |
Theileria parva | TP04_0216 | hypothetical protein |
Gene/Ortholog | Organism | Phenotype | Source Study |
---|---|---|---|
b2953 | Escherichia coli | non-essential | goodall |
nmpdr | Genome-scale essentiality datasets from published studies (M. tuberculosis) | National Microbial Pathogen Data Resource |
keio | Systematic single-gene knock-out mutants of E. coli K12 | The Keio Collection |
wormbase | C. elegans RNAi experiments | WormBase web site, http://www.wormbase.org, release WS170 |
alsford | High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome | Genome Res 2011, 21:915-924 |
yeastgenome | Systematic deletion of yeast genes | Saccharomyces Genome Database |
blattner | Systematic mutagenesis of the E. coli (MG1655) genome | J Bacteriol 2004, 186:4921-4930 |
gerdes | Experimental determination and system-level analysis of essential genes in E. coli MG1655 | Gerdes et al., J Bacteriol. 2003 185:5673-84 |
shigen | Profiling of E. coli Chromosome (PEC) | National Institute of Genetics, Japan |
neb | C. elegans RNAi phenotypes | Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs |
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.