Detailed view for LOAG_12429

Basic information

TDR Targets ID: 947305
Loa Loa (eye worm), hypothetical protein
Source Database / ID:  KEGG  

pI: 6.0982 | Length (AA): 613 | MW (Da): 70367 | Paralog Number: 1

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF10189   Integrator complex subunit 3

Gene Ontology

Mouse over links to read term descriptions.
No GO information for this protein.

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 2 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
12 475 4owt (A) 34 498 30.00 0 1 1.28643 -1.47
353 458 5x5y (G) 227 333 32.00 0.22 0.14 0.12582 1.64

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_132547)

Species Accession Gene Product
Arabidopsis thaliana AT4G14590   protein EMBRYO DEFECTIVE 2739
Brugia malayi Bm1_48510   hypothetical protein
Caenorhabditis elegans CELE_Y92H12A.4   Protein Y92H12A.4
Dictyostelium discoideum DDB_G0268706   integrator complex subunit 3
Drosophila melanogaster Dmel_CG17665   Integrator 3
Echinococcus granulosus EgrG_000570800   Integrator complex subunit 3
Echinococcus multilocularis EmuJ_000570800   Integrator complex, subunit 3
Homo sapiens ENSG00000143624   integrator complex subunit 3
Loa Loa (eye worm) LOAG_12429   hypothetical protein
Loa Loa (eye worm) LOAG_07131   hypothetical protein
Mus musculus ENSMUSG00000027933   integrator complex subunit 3
Oryza sativa 4349898   Os11g0171400
Onchocerca volvulus OVOC1061   Integrator complex subunit 3 homolog
Schistosoma japonicum Sjp_0091370   Integrator complex subunit 3, putative
Schistosoma japonicum Sjp_0091380   Integrator complex subunit 3, putative
Schistosoma mansoni Smp_169520   hypothetical protein
Schmidtea mediterranea mk4.000484.16  
Schmidtea mediterranea mk4.008110.01  
Schmidtea mediterranea mk4.008110.02   Integrator complex subunit 3
Schmidtea mediterranea mk4.000484.13   Integrator complex subunit 3
Schmidtea mediterranea mk4.000484.17   Integrator complex subunit 3
Schmidtea mediterranea mk4.003783.02  
Schmidtea mediterranea mk4.000484.14  
Schmidtea mediterranea mk4.003783.03  
Schmidtea mediterranea mk4.003783.01   Integrator complex subunit 3

Essentiality

LOAG_12429 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
CELE_Y92H12A.4 Caenorhabditis elegans slow growth wormbase
Show/Hide essentiality data references
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier LOAG_12429 (Loa Loa (eye worm)), hypothetical protein
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