Detailed view for EmuJ_000868800

Basic information

TDR Targets ID: 964312
Echinococcus multilocularis, sperm associated antigen 6
Source Database / ID:  GeneDB

pI: 6.3615 | Length (AA): 340 | MW (Da): 37042 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

No Pfam domain information for this protein.

Gene Ontology

Mouse over links to read term descriptions.
GO:0005488   binding  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 5 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
1 339 1un0 (A) 168 512 18.00 0 1 1.28836 -0.42
1 339 2jdq (A) 164 507 15.00 0 1 1.23236 -0.06
7 240 4rzp (A) 3 234 22.00 0 1 1.12944 -1.53
54 202 4xvp (D) 20 135 37.00 0.38 0.98 0.517335 0.79
93 225 4rxh (B) 84 217 27.00 0 1 0.828476 -0.98

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_130233)

Species Accession Gene Product
Echinococcus granulosus EgrG_000868800   sperm associated antigen 6
Echinococcus multilocularis EmuJ_000868800   sperm associated antigen 6
Giardia lamblia GL50803_16202   Axoneme central apparatus protein
Homo sapiens ENSG00000077327   sperm associated antigen 6
Leishmania braziliensis LbrM.20.5640   axoneme central apparatus protein, putative
Leishmania donovani LdBPK_201450.1   paralyzed flagella protein 16
Leishmania infantum LinJ.20.1450   axoneme central apparatus protein, putative
Leishmania major LmjF.20.1400   axoneme central apparatus protein, putative
Leishmania mexicana LmxM.20.1400   axoneme central apparatus protein, putative
Mus musculus ENSMUSG00000022783   sperm associated antigen 6
Mus musculus 381350   cDNA sequence BC061194
Neospora caninum NCLIV_006730   armadillo/beta-catenin-like repeat protein, putative
Plasmodium berghei PBANKA_0917400   armadillo repeat protein PF16
Plasmodium falciparum PF3D7_1130800   armadillo repeat protein PF16, putative
Plasmodium knowlesi PKNH_0928900   armadillo repeat protein PF16, putative
Plasmodium vivax PVX_092145   PF16 protein, putative
Plasmodium yoelii PY01164   axoneme central apparatus protein
Schistosoma japonicum Sjp_0218680   Sperm-associated antigen 6, putative
Schistosoma mansoni Smp_042740   spag6
Schmidtea mediterranea mk4.004020.03   Sperm-associated antigen 6
Schmidtea mediterranea mk4.013100.00   Sperm-associated antigen 6
Schmidtea mediterranea mk4.004020.04   Sperm-associated antigen 6
Trypanosoma brucei gambiense Tbg972.1.1580   axoneme central apparatus protein, putative,importin alpha-1 subunit, putative
Trypanosoma brucei Tb927.1.2670   paralyzed flagella 16
Trypanosoma cruzi TcCLB.510955.40   paralyzed flagella protein 16
Trichomonas vaginalis TVAG_059360   spag6, putative
Trichomonas vaginalis TVAG_035230   sperm-associated antigen, putative

Essentiality

EmuJ_000868800 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb927.1.2670 Trypanosoma brucei significant loss of fitness in bloodstream forms (3 days) alsford
Tb927.1.2670 Trypanosoma brucei significant loss of fitness in bloodstream forms (6 days) alsford
Tb927.1.2670 Trypanosoma brucei no significant loss or gain of fitness in procyclic forms alsford
Tb927.1.2670 Trypanosoma brucei significant loss of fitness in differentiation of procyclic to bloodstream forms alsford
Show/Hide essentiality data references
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier EmuJ_000868800 (Echinococcus multilocularis), sperm associated antigen 6
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