Detailed view for Sjp_0030030

Basic information

TDR Targets ID: 967327
Schistosoma japonicum, ko:K05327 ryanodine receptor, invertebrate, putative
Source Database / ID:  Wormbase Parasite  

pI: 6.7493 | Length (AA): 1630 | MW (Da): 183484 | Paralog Number: 2

Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 0

Druggability Group : DG

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF08454   RyR and IP3R Homology associated
PF13499   EF-hand domain pair

Gene Ontology

Mouse over links to read term descriptions.
GO:0005509   calcium ion binding  
GO:0006816   calcium ion transport  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 6 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
2 44 4esu (A) 2897 2939 56.00 0.000000006 0.64 0.571597 0.6
428 555 4h7y (A) 38 150 17.00 0.00043 0.01 0.117776 -0.17
1296 1351 2k7c (A) 106 163 48.00 0 1 0.608277 -0.55
1296 1349 2jnf (A) 95 149 39.00 0.012 0.77 0.524249 -0.43
1296 1352 3pn7 (C) 88 147 39.00 0.43 1 0.582091 -1.16
1296 1388 3sg6 (A) 318 432 35.00 0.022 1 0.32419 -0.16

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_129275)

Species Accession Gene Product
Brugia malayi Bm1_45145   Ryanodine Receptor TM 4-6 family protein
Caenorhabditis elegans CELE_K11C4.5   Protein UNC-68, isoform A
Drosophila melanogaster Dmel_CG10844   Ryanodine receptor
Echinococcus granulosus EgrG_000544500   ryanodine receptor 44f
Echinococcus granulosus EgrG_000544400   ryanodine receptor 44f
Echinococcus multilocularis EmuJ_000544500   ryanodine receptor 44f
Echinococcus multilocularis EmuJ_000544400   ryanodine receptor 44f
Homo sapiens ENSG00000196218   ryanodine receptor 1 (skeletal)
Homo sapiens ENSG00000198626   ryanodine receptor 2 (cardiac)
Homo sapiens ENSG00000198838   ryanodine receptor 3
Loa Loa (eye worm) LOAG_00667   ryanodine receptor
Loa Loa (eye worm) LOAG_00666   ryanodine receptor
Loa Loa (eye worm) LOAG_00665   hypothetical protein
Mus musculus ENSMUSG00000021313   ryanodine receptor 2, cardiac
Mus musculus ENSMUSG00000030592   ryanodine receptor 1, skeletal muscle
Mus musculus ENSMUSG00000057378   ryanodine receptor 3
Schistosoma japonicum Sjp_0030030   ko:K05327 ryanodine receptor, invertebrate, putative
Schistosoma japonicum Sjp_0001530   Ryanodine receptor 3, putative
Schistosoma japonicum Sjp_0020010   ko:K04963 ryanodine receptor 3 (brain), putative
Schistosoma mansoni Smp_163570   ryanodine receptor related
Schmidtea mediterranea mk4.006247.02  
Schmidtea mediterranea mk4.005685.00   Ryanodine receptor 44F
Schmidtea mediterranea mk4.021380.01  
Schmidtea mediterranea mk4.005685.02   Ryanodine receptor 44F
Schmidtea mediterranea mk4.021380.00  
Schmidtea mediterranea mk4.006247.04  
Schmidtea mediterranea mk4.006247.00  
Schmidtea mediterranea mk4.035168.00  
Schmidtea mediterranea mk4.010081.01  
Schmidtea mediterranea mk4.021380.02  
Schmidtea mediterranea mk4.005685.03   Ryanodine receptor 44F
Schmidtea mediterranea mk4.034748.00  
Schmidtea mediterranea mk4.010081.00  
Schmidtea mediterranea mk4.029716.00   Ryanodine receptor 44F
Schmidtea mediterranea mk4.005685.04  
Schmidtea mediterranea mk4.010081.02  
Schmidtea mediterranea mk4.005685.05  
Schmidtea mediterranea mk4.010081.03  

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Drosophila melanogaster Ryanodine receptor Compounds References
Canis lupus familiaris Ryanodine receptor 2 Compounds References
Homo sapiens ryanodine receptor 1 (skeletal) Compounds References
Oryctolagus cuniculus Ryanodine receptor 1 Compounds References
Spodoptera exigua Ryanodien receptor Compounds References
Mus musculus Ryanodine receptor 3 Compounds References
Bemisia tabaci Ryanodine receptor Compounds References
Mus musculus ryanodine receptor 1, skeletal muscle Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier Sjp_0030030 (Schistosoma japonicum), ko:K05327 ryanodine receptor, invertebrate, putative
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