Detailed view for Sjp_0017750

Basic information

TDR Targets ID: 974120
Schistosoma japonicum, Short transient receptor potential channel 3, putative
Source Database / ID:  Wormbase Parasite  

pI: 7.04 | Length (AA): 193 | MW (Da): 22285 | Paralog Number: 3

Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 0

Druggability Group : DG

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF08344   Transient receptor ion channel II

Gene Ontology

Mouse over links to read term descriptions.
GO:0070588   GO:calcium ion transmembrane transport  

GO:0016020   membrane  
GO:0005262   calcium channel activity  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 3 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
11 215 3aji (A) 38 212 15.00 0.000000087 1 0.820323 1.02
16 46 2gbm (A) 13 43 39.00 0.15 0.79 0.48904 1.13
100 203 2vge (A) 650 753 13.00 0.22 0.07 0.632368 -0.38

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_131097)

Species Accession Gene Product
Echinococcus granulosus EgrG_000656500   short transient receptor potential channel 6
Echinococcus multilocularis EmuJ_000656500   short transient receptor potential channel 6
Homo sapiens ENSG00000069018   transient receptor potential cation channel, subfamily C, member 7
Homo sapiens ENSG00000138741   transient receptor potential cation channel, subfamily C, member 3
Homo sapiens ENSG00000137672   transient receptor potential cation channel, subfamily C, member 6
Mus musculus ENSMUSG00000031997   transient receptor potential cation channel, subfamily C, member 6
Mus musculus ENSMUSG00000021541   transient receptor potential cation channel, subfamily C, member 7
Mus musculus ENSMUSG00000027716   transient receptor potential cation channel, subfamily C, member 3
Schistosoma japonicum Sjp_0017780   expressed protein
Schistosoma japonicum Sjp_0017750   Short transient receptor potential channel 3, putative
Schistosoma japonicum Sjp_0017770   Transient receptor potential-gamma protein, putative
Schistosoma japonicum Sjp_0017760   Short transient receptor potential channel 7, putative
Schistosoma mansoni Smp_169150   transient receptor potential channel
Schmidtea mediterranea mk4.008774.01  
Schmidtea mediterranea mk4.021106.02   Transient receptor potential channel,putative
Schmidtea mediterranea mk4.032219.00  
Schmidtea mediterranea mk4.024575.00  

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Mus musculus transient receptor potential cation channel, subfamily C, member 6 Compounds References
Homo sapiens transient receptor potential cation channel, subfamily C, member 3 Compounds References
Homo sapiens transient receptor potential cation channel, subfamily C, member 6 Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier Sjp_0017750 (Schistosoma japonicum), Short transient receptor potential channel 3, putative
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