Detailed view for Sjp_0089560

Basic information

TDR Targets ID: 974906
Schistosoma japonicum, ko:K07117 SET and MYND domain containing 1a, putative
Source Database / ID:  Wormbase Parasite  

pI: 8.1173 | Length (AA): 350 | MW (Da): 40273 | Paralog Number: 3

Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 0

Druggability Group : DG

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF01753   MYND finger

Gene Ontology

Mouse over links to read term descriptions.
No GO information for this protein.

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 4 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
4 270 5v37 (A) 26 304 22.00 0.000000000033 1 0.922243 0.9
5 340 5arf (A) 30 368 19.00 0 0.99 1.08495 0.84
23 67 4a24 (A) 500 542 35.00 0 0.47 0.46474 0
26 240 3qww (A) 51 274 27.00 0 1 0.909646 -0.01

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_129617)

Species Accession Gene Product
Caenorhabditis elegans CELE_K08B12.5   Protein MRCK-1
Drosophila melanogaster Dmel_CG4012   genghis khan
Echinococcus granulosus EgrG_000212000   Serine/threonine-protein kinase Genghis Khan
Echinococcus multilocularis EmuJ_000212000   serine:threonine protein kinase MRCK beta
Homo sapiens ENSG00000198752   CDC42 binding protein kinase beta (DMPK-like)
Homo sapiens ENSG00000171219   CDC42 binding protein kinase gamma (DMPK-like)
Homo sapiens ENSG00000143776   CDC42 binding protein kinase alpha (DMPK-like)
Loa Loa (eye worm) LOAG_09020   AGC/DMPK/GEK protein kinase
Mus musculus ENSMUSG00000026490   CDC42 binding protein kinase alpha
Mus musculus ENSMUSG00000024769   CDC42 binding protein kinase gamma (DMPK-like)
Mus musculus ENSMUSG00000021279   CDC42 binding protein kinase beta
Schistosoma japonicum Sjp_0115790   expressed protein
Schistosoma japonicum Sjp_0089560   ko:K07117 SET and MYND domain containing 1a, putative
Schistosoma japonicum Sjp_0089570   ko:K08282 non-specific serine/threonine protein kinase [EC2.7.11.1], putative
Schistosoma japonicum Sjp_0304700   expressed protein
Schistosoma mansoni Smp_158560.2   serine/threonine protein kinase
Schistosoma mansoni Smp_158560.1   serine/threonine protein kinase
Schmidtea mediterranea mk4.001384.12   Serine/threonine-protein kinase Genghis Khan
Schmidtea mediterranea mk4.016719.00  
Schmidtea mediterranea mk4.005383.01  
Schmidtea mediterranea mk4.004877.00   Serine/threonine kinase

Essentiality

Sjp_0089560 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
CELE_K08B12.5 Caenorhabditis elegans slow growth wormbase
Show/Hide essentiality data references
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Homo sapiens CDC42 binding protein kinase alpha (DMPK-like) Compounds References
Homo sapiens CDC42 binding protein kinase beta (DMPK-like) Compounds References
Homo sapiens CDC42 binding protein kinase gamma (DMPK-like) Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier Sjp_0089560 (Schistosoma japonicum), ko:K07117 SET and MYND domain containing 1a, putative
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