Detailed view for Sjp_0049810

Basic information

TDR Targets ID: 974990
Schistosoma japonicum, ko:K05743 LIM domain kinase 1, putative
Source Database / ID:  Wormbase Parasite  

pI: 9.2998 | Length (AA): 212 | MW (Da): 24314 | Paralog Number: 0

Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 0

Druggability Group : DG

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00069   Protein kinase domain

Gene Ontology

Mouse over links to read term descriptions.
GO:0005524   ATP binding  
GO:0004672   protein kinase activity  
GO:0006468   protein amino acid phosphorylation  

Structural information

Modbase 3D models:

There are 5 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
45 209 3bkb (A) 532 699 27.00 0 1 1.12369 -0.2
63 209 4iva (A) 841 992 30.00 0 1 1.09738 -0.59
66 209 5hvj (A) 334 476 38.00 0 1 1.19016 -0.46
67 209 3ckw (A) 5 145 25.00 0 0.98 0.908425 0.19
70 206 5nxd (A) 330 464 41.00 0 1 1.08009 0.18

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_131191)

Species Accession Gene Product
Drosophila melanogaster Dmel_CG1848   LIM-kinase1
Echinococcus granulosus EgrG_000659800   dual specificity testis-specific protein kinase
Echinococcus multilocularis EmuJ_000659800   dual specificity testis specific protein kinase
Homo sapiens ENSG00000106683   LIM domain kinase 1
Homo sapiens ENSG00000182541   LIM domain kinase 2
Mus musculus ENSMUSG00000029674   LIM-domain containing, protein kinase
Mus musculus ENSMUSG00000020451   LIM motif-containing protein kinase 2
Schistosoma japonicum Sjp_0049810   ko:K05743 LIM domain kinase 1, putative
Schistosoma mansoni Smp_047870.2   protein kinase
Schistosoma mansoni Smp_047870.1   protein kinase
Schmidtea mediterranea mk4.026744.01   Protein kinase
Schmidtea mediterranea mk4.007673.06   Protein kinase

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Rattus norvegicus LIM domain kinase 1 Compounds References
Homo sapiens LIM domain kinase 1 Compounds References
Homo sapiens LIM domain kinase 2 Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier Sjp_0049810 (Schistosoma japonicum), ko:K05743 LIM domain kinase 1, putative
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