Detailed view for OVOC93

Basic information

TDR Targets ID: 989490
Onchocerca volvulus, 39S ribosomal protein L13, mitochondrial homolog
Source Database / ID:  Wormbase Parasite  

pI: 6.2591 | Length (AA): 503 | MW (Da): 58955 | Paralog Number: 8169

Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 4

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

No Pfam domain information for this protein.

Gene Ontology

Mouse over links to read term descriptions.
No GO information for this protein.

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 3 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
9 140 4wfa (G) 6 137 25.00 0 1 0.927915 0.2
16 145 5dm6 (G) 38 167 25.00 0.0000000057 1 0.9981 -0.3
134 183 4nfz (A) 1 57 34.00 0.88 0.26 0.464685 -0.08

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

This protein does not belong to any OrthoMCL cluster.

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Macaca mulatta Neuronal acetylcholine receptor subunit alpha-7 502 aa 37.7% 470 aa Compounds References
Rattus norvegicus Neuronal acetylcholine receptor; alpha3/beta2 500 aa 36.1% 463 aa Compounds References
Rattus norvegicus Neuronal acetylcholine receptor; alpha3/beta4 499 aa 36.9% 477 aa Compounds References
Torpedo californica Acetylcholine receptor protein alpha chain 461 aa 36.0% 453 aa Compounds References
Rattus norvegicus Neuronal acetylcholine receptor protein alpha-7 subunit 502 aa 36.8% 475 aa Compounds References
Cavia porcellus Serotonin 3a (5-HT3a) receptor 490 aa 28.3% 480 aa Compounds References
Rattus norvegicus Nicotinic acetylcholine receptor alpha6/alpha3/beta4 495 aa 32.6% 469 aa Compounds References
Rattus norvegicus Neuronal acetylcholine receptor subunit alpha-3 499 aa 36.9% 477 aa Compounds References
Rattus norvegicus Neuronal acetylcholine receptor subunit beta-4 495 aa 32.6% 469 aa Compounds References
Rattus norvegicus Nicotinic acetylcholine receptor alpha6/alpha3/beta2/beta3 464 aa 36.4% 450 aa Compounds References
Rattus norvegicus Neuronal acetylcholine receptor; alpha2/beta4 495 aa 32.6% 469 aa Compounds References
Rattus norvegicus Neuronal acetylcholine receptor protein alpha-9 subunit 479 aa 37.1% 455 aa Compounds References
Rattus norvegicus Serotonin 3 (5-HT3) receptor 483 aa 31.0% 490 aa Compounds References
Rattus norvegicus Neuronal acetylcholine receptor; alpha4/beta4 495 aa 32.6% 469 aa Compounds References
Rattus norvegicus Neuronal acetylcholine receptor subunit alpha-6 493 aa 36.4% 459 aa Compounds References
Rattus norvegicus Neuronal acetylcholine receptor 452 aa 34.2% 485 aa Compounds References
Rattus norvegicus Serotonin 3a (5-HT3a) receptor 483 aa 31.0% 490 aa Compounds References
Rattus norvegicus Nicotinic acetylcholine receptor alpha9/alpha10 447 aa 37.0% 449 aa Compounds References
Rattus norvegicus Neuronal acetylcholine receptor; alpha2/beta2 500 aa 36.1% 463 aa Compounds References
Aplysia californica Soluble acetylcholine receptor 236 aa 31.9% 207 aa Compounds References
Rattus norvegicus Neuronal acetylcholine receptor protein alpha-10 subunit 447 aa 37.0% 449 aa Compounds References
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier OVOC93 (Onchocerca volvulus), 39S ribosomal protein L13, mitochondrial homolog
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