pI: 4.4408 |
Length (AA): 208 |
MW (Da): 23791 |
Paralog Number:
0
Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Modbase 3D models:
There are 5 models calculated for this protein. More info on
these models, including the
models themselves is available at:
Modbase
Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
---|---|---|---|---|---|---|---|---|---|
8 | 182 | 1gw5 (S) | 1 | 142 | 23.00 | 0 | 1 | 1.02 | -0.97 |
9 | 180 | 1gw5 (S) | 2 | 140 | 22.00 | 0 | 1 | 0.93 | -1.08 |
3 | 175 | 3tjz (C) | 7 | 146 | 31.00 | 0 | 1 | 1.04503 | -0.44 |
8 | 182 | 2vgl (S) | 1 | 142 | 26.00 | 0 | 1 | 0.994646 | -0.34 |
8 | 182 | 2vgl (S) | 1 | 142 | 23.00 | 0 | 1 | 0.942646 | -0.13 |
Help me make sense of these data.
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
Upregulation Percent | Ranking | Stage | Dataset |
---|---|---|---|
Upper 80-100% percentile | intra-erythrocytic - 0 hs, intra-erythrocytic - 8 hs, intra-erythrocytic - 16 hs, intra-erythrocytic - 40 hs, intra-erythrocytic - 48 hs, gametocyte, merozoite, sporozoite, early ring, early schizont, early trophozoite, late ring, late schizont, late trophozoite, Oocyst, Ring, Sporozoite. | Otto TD PlasmoDB Zanghi G |
Upregulation Percent | Ranking | Stage | Dataset |
---|---|---|---|
Upper 60-80% percentile | intra-erythrocytic - 24 hs, intra-erythrocytic - 32 hs, Female Gametocyte, Male Gametocyte. | Otto TD Lasonder E |
Otto TD | New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq. |
Lasonder E | Integrated transcriptomic and proteomic analyses of P. falciparum gametocytes. Molecular insight into sex-specific processes and translational repression. |
PlasmoDB | Data on upregulation of P. falciparum genes in different life cycle stages, combined from several microarray experiments available in PlasmoDB |
Zanghi G | A Specific PfEMP1 Is Expressed in P. falciparum Sporozoites and Plays a Role in Hepatocyte Infection. |
Ortholog group members (OG5_127654)
Species | Accession | Gene Product |
---|---|---|
Arabidopsis thaliana | AT1G60970 | coatomer subunit zeta-1 |
Arabidopsis thaliana | AT4G08520 | putative coatomer subunit zeta-3 |
Arabidopsis thaliana | AT3G09800 | coatomer subunit zeta-2 |
Babesia bovis | BBOV_III000560 | nonclathrin coat protein zeta2-cop-related protein, putative |
Brugia malayi | Bm1_16625 | coatomer zeta subunit |
Candida albicans | CaO19.11860 | similar to S. cerevisiae RET3 (YPL010W) COPI vesicle coat component |
Candida albicans | CaO19.4382 | similar to S. cerevisiae RET3 (YPL010W) COPI vesicle coat component |
Caenorhabditis elegans | CELE_F59E10.3 | Protein F59E10.3 |
Cryptosporidium hominis | Chro.70463 | CG3948-PA |
Cryptosporidium parvum | cgd7_4180 | hypothetical protein |
Dictyostelium discoideum | DDB_G0289523 | clathrin adaptor complex, small chain family protein |
Drosophila melanogaster | Dmel_CG3948 | Coat Protein (coatomer) zeta |
Echinococcus granulosus | EgrG_000139300 | coatomer subunit zeta 1 |
Echinococcus granulosus | EgrG_000145000 | coatomer protein complex subunit zeta 1 |
Entamoeba histolytica | EHI_122850 | hypothetical protein |
Echinococcus multilocularis | EmuJ_000139300 | coatomer protein complex, subunit zeta 1 |
Echinococcus multilocularis | EmuJ_000145000 | coatomer subunit zeta 1 |
Homo sapiens | ENSG00000005243 | coatomer protein complex, subunit zeta 2 |
Homo sapiens | ENSG00000111481 | coatomer protein complex, subunit zeta 1 |
Leishmania braziliensis | LbrM.34.0150 | coatomer zeta subunit, putative |
Leishmania donovani | LdBPK_350110.1 | coatomer subunit zeta, putative |
Leishmania infantum | LinJ.35.0110 | coatomer zeta subunit, putative |
Leishmania major | LmjF.35.0110 | coatomer zeta subunit, putative |
Leishmania mexicana | LmxM.34.0110 | coatomer zeta subunit, putative |
Loa Loa (eye worm) | LOAG_01432 | hypothetical protein |
Mus musculus | ENSMUSG00000018672 | coatomer protein complex, subunit zeta 2 |
Mus musculus | ENSMUSG00000060992 | coatomer protein complex, subunit zeta 1 |
Neospora caninum | NCLIV_019600 | hypothetical protein |
Oryza sativa | 4327378 | Os01g0838800 |
Oryza sativa | 4329152 | Os02g0317400 |
Oryza sativa | 4339020 | Os05g0461000 |
Plasmodium berghei | PBANKA_0717400 | coatomer subunit zeta, putative |
Plasmodium falciparum | PF3D7_0415400 | coatomer subunit zeta, putative |
Plasmodium knowlesi | PKNH_0507000 | coatomer subunit zeta, putative |
Plasmodium vivax | PVX_089725 | coatomer subunit zeta, putative |
Plasmodium yoelii | PY04027 | nonclathrin coat protein zeta1-COP, putative |
Saccharomyces cerevisiae | YPL010W | Ret3p |
Schistosoma japonicum | Sjp_0043790 | Coatomer subunit zeta-1, putative |
Schistosoma mansoni | Smp_020220.2 | zeta-coat protein |
Schistosoma mansoni | Smp_020220.1 | zeta-coat protein |
Schmidtea mediterranea | mk4.002734.01 | Probable coatomer subunit zeta |
Trypanosoma brucei gambiense | Tbg972.10.5290 | coatomer zeta subunit, putative |
Trypanosoma brucei | Tb927.10.4270 | coatomer subunit zeta, putative |
Trypanosoma congolense | TcIL3000_10_3570 | coatomer subunit zeta, putative |
Trypanosoma cruzi | TcCLB.506295.90 | coatomer subunit zeta, putative |
Trypanosoma cruzi | TcCLB.511469.30 | coatomer subunit zeta, putative |
Toxoplasma gondii | TGME49_280550 | clathrin adaptor complex small chain subfamily protein |
Trichomonas vaginalis | TVAG_121700 | zeta-coat protein, putative |
Gene/Ortholog | Organism | Phenotype | Source Study |
---|---|---|---|
Tb927.10.4270 | Trypanosoma brucei | significant loss of fitness in bloodstream forms (3 days) | alsford |
Tb927.10.4270 | Trypanosoma brucei | no significant loss or gain of fitness in bloodstream forms (6 days) | alsford |
Tb927.10.4270 | Trypanosoma brucei | significant gain of fitness in procyclic forms | alsford |
Tb927.10.4270 | Trypanosoma brucei | no significant loss or gain of fitness in differentiation of procyclic to bloodstream forms | alsford |
CELE_F59E10.3 | Caenorhabditis elegans | adult lethal | wormbase |
CELE_F59E10.3 | Caenorhabditis elegans | embryonic lethal | wormbase |
CELE_F59E10.3 | Caenorhabditis elegans | larval lethal | wormbase |
CELE_F59E10.3 | Caenorhabditis elegans | sterile | wormbase |
YPL010W | Saccharomyces cerevisiae | inviable | yeastgenome |
PBANKA_0717400 | Plasmodium berghei | Essential | plasmo |
TGME49_280550 | Toxoplasma gondii | Probably essential | sidik |
blattner | Systematic mutagenesis of the E. coli (MG1655) genome | J Bacteriol 2004, 186:4921-4930 |
alsford | High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome | Genome Res 2011, 21:915-924 |
nmpdr | Genome-scale essentiality datasets from published studies (M. tuberculosis) | National Microbial Pathogen Data Resource |
wormbase | C. elegans RNAi experiments | WormBase web site, http://www.wormbase.org, release WS170 |
keio | Systematic single-gene knock-out mutants of E. coli K12 | The Keio Collection |
shigen | Profiling of E. coli Chromosome (PEC) | National Institute of Genetics, Japan |
neb | C. elegans RNAi phenotypes | Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs |
gerdes | Experimental determination and system-level analysis of essential genes in E. coli MG1655 | Gerdes et al., J Bacteriol. 2003 185:5673-84 |
yeastgenome | Systematic deletion of yeast genes | Saccharomyces Genome Database |
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.
Type | Source | Notes |
---|---|---|
soluble recombinant protein | Structural Genomics for Pathogenic Protozoa (SGPP) | Pviv008190; Recombinant protein: full-length; Source: P vivax; nonclathrin coat protein zeta2-cop-related protein, putative homolog ; Identifier: Pv089725 |