pI: 8.0122 |
Length (AA): 367 |
MW (Da): 38120 |
Paralog Number:
0
Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Modbase 3D models:
There are 3 models calculated for this protein. More info on
these models, including the
models themselves is available at:
Modbase
Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
---|---|---|---|---|---|---|---|---|---|
2 | 356 | 2hma (A) | 8 | 363 | 36.00 | 0 | 1 | 1.3872 | -0.3 |
2 | 359 | 2der (A) | 7 | 366 | 31.00 | 0 | 1 | 1.20148 | 0.54 |
2 | 77 | 2ywb (A) | 211 | 274 | 45.00 | 0.072 | 0.15 | 0.389984 | 0.92 |
Help me make sense of these data.
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
Ortholog group members (OG5_127383)
Species | Accession | Gene Product |
---|---|---|
Arabidopsis thaliana | AT1G51310 | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
Babesia bovis | BBOV_III005960 | tRNA methyl transferase family protein |
Brugia malayi | Bm1_08740 | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
Candida albicans | CaO19.7245 | similar to S. cerevisiae YDL033C |
Caenorhabditis elegans | CELE_B0035.16 | Protein B0035.16 |
Chlamydia trachomatis | CT_287 | tRNA-specific 2-thiouridylase MnmA |
Dictyostelium discoideum | DDB_G0288979 | tRNA -methyltransferase |
Drosophila melanogaster | Dmel_CG3021 | CG3021 gene product from transcript CG3021-RA |
Escherichia coli | b1133 | tRNA(Gln,Lys,Glu) U34 2-thiouridylase, first step in mnm(5)-s(2)U34-tRNA synthesis |
Echinococcus granulosus | EgrG_001192300 | mitochondrial tRNA specific 2 thiouridylase |
Echinococcus multilocularis | EmuJ_001192300 | mitochondrial tRNA specific 2 thiouridylase |
Homo sapiens | ENSG00000100416 | tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase |
Leishmania braziliensis | LbrM.07.0130 | tRNA-methyl transferase, putative |
Leishmania donovani | LdBPK_070280.1 | tRNA-methyl transferase, putative |
Leishmania infantum | LinJ.07.0280 | tRNA-methyl transferase, putative |
Leishmania major | LmjF.07.0130 | tRNA-methyl transferase, putative |
Leishmania mexicana | LmxM.07.0130 | tRNA-methyl transferase, putative |
Loa Loa (eye worm) | LOAG_02754 | hypothetical protein |
Mycobacterium leprae | ML1707c | probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU |
Mus musculus | ENSMUSG00000022386 | tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase |
Mycobacterium tuberculosis | Rv3024c | Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU |
Mycobacterium ulcerans | MUL_1928 | tRNA-specific 2-thiouridylase MnmA |
Neospora caninum | NCLIV_053570 | tRNA methyltransferase domain-containing protein, putative |
Oryza sativa | 4331793 | Os03g0174600 |
Plasmodium berghei | PBANKA_0504000 | tRNA methyltransferase, putative |
Plasmodium falciparum | PF3D7_1019800 | tRNA methyltransferase, putative |
Plasmodium knowlesi | PKNH_0604000 | tRNA methyltransferase, putative |
Plasmodium vivax | PVX_001855 | tRNA methyltransferase, putative |
Plasmodium yoelii | PY00607 | probable tRNA-methyltransferase |
Saccharomyces cerevisiae | YDL033C | Slm3p |
Schistosoma japonicum | Sjp_0015200 | ko:K00566 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [EC2.1.1.61], putative |
Schistosoma mansoni | Smp_113390 | tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase |
Schistosoma mansoni | Smp_178920 | tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase |
Schmidtea mediterranea | mk4.015951.00 | Probable mitochondrial tRNA-specific 2-thiouridylase 1 |
Schmidtea mediterranea | mk4.066048.00 | |
Schmidtea mediterranea | mk4.034030.00 | Probable mitochondrial tRNA-specific 2-thiouridylase 1 |
Schmidtea mediterranea | mk4.040827.00 | |
Trypanosoma brucei gambiense | Tbg972.8.1460 | tRNA-methyl transferase, putative |
Trypanosoma brucei | Tb927.8.1830 | tRNA-methyl transferase, putative |
Trypanosoma congolense | TcIL3000_8_1760 | tRNA-methyl transferase, putative |
Toxoplasma gondii | TGME49_309110 | tRNA methyl transferase |
Theileria parva | TP02_0339 | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative |
Wolbachia endosymbiont of Brugia malayi | Wbm0155 | tRNA-specific 2-thiouridylase MnmA |
Gene/Ortholog | Organism | Phenotype | Source Study |
---|---|---|---|
Tb927.8.1830 | Trypanosoma brucei | no significant loss or gain of fitness in bloodstream forms (3 days) | alsford |
Tb927.8.1830 | Trypanosoma brucei | no significant loss or gain of fitness in bloodstream forms (6 days) | alsford |
Tb927.8.1830 | Trypanosoma brucei | no significant loss or gain of fitness in procyclic forms | alsford |
Tb927.8.1830 | Trypanosoma brucei | significant gain of fitness in differentiation of procyclic to bloodstream forms | alsford |
b1133 | Escherichia coli | essential | goodall |
PBANKA_0504000 | Plasmodium berghei | Essential | plasmo |
TGME49_309110 | Toxoplasma gondii | Probably essential | sidik |
gerdes | Experimental determination and system-level analysis of essential genes in E. coli MG1655 | Gerdes et al., J Bacteriol. 2003 185:5673-84 |
neb | C. elegans RNAi phenotypes | Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs |
blattner | Systematic mutagenesis of the E. coli (MG1655) genome | J Bacteriol 2004, 186:4921-4930 |
shigen | Profiling of E. coli Chromosome (PEC) | National Institute of Genetics, Japan |
yeastgenome | Systematic deletion of yeast genes | Saccharomyces Genome Database |
wormbase | C. elegans RNAi experiments | WormBase web site, http://www.wormbase.org, release WS170 |
nmpdr | Genome-scale essentiality datasets from published studies (M. tuberculosis) | National Microbial Pathogen Data Resource |
alsford | High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome | Genome Res 2011, 21:915-924 |
keio | Systematic single-gene knock-out mutants of E. coli K12 | The Keio Collection |
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.