Detailed information for compound 1460891

Basic information

Technical information
  • TDR Targets ID: 1460891
  • Name: 5-fluoro-2-methyl-1-[1-[(1-phenethyltetrazol- 5-yl)methyl]piperidin-4-yl]benzimidazole hydr ochloride
  • MW: 455.959 | Formula: C23H27ClFN7
  • H donors: 0 H acceptors: 4 LogP: 4.3 Rotable bonds: 6
    Rule of 5 violations (Lipinski): 1
  • SMILES: Fc1ccc2c(c1)nc(n2C1CCN(CC1)Cc1nnnn1CCc1ccccc1)C.Cl
  • InChi: 1S/C23H26FN7.ClH/c1-17-25-21-15-19(24)7-8-22(21)31(17)20-10-12-29(13-11-20)16-23-26-27-28-30(23)14-9-18-5-3-2-4-6-18;/h2-8,15,20H,9-14,16H2,1H3;1H
  • InChiKey: PJXYXBRLPHYRIW-UHFFFAOYSA-N  

Network

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Synonyms

  • 5-fluoro-2-methyl-1-[1-[(1-phenethyltetrazol-5-yl)methyl]-4-piperidyl]benzimidazole hydrochloride
  • 5-fluoro-2-methyl-1-[1-[(1-phenethyl-5-tetrazolyl)methyl]-4-piperidinyl]benzimidazole hydrochloride
  • 5-fluoro-2-methyl-1-[1-[(1-phenethyl-1,2,3,4-tetrazol-5-yl)methyl]piperidin-4-yl]benzimidazole hydrochloride
  • MLS000889498
  • 5-Fluoro-2-methyl-1-[1-(1-phenethyl-1H-tetrazol-5-ylmethyl)-piperidin-4-yl]-1H-benzoimidazole
  • MLS000030165
  • SMR000006470

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Homo sapiens ubiquitin specific peptidase 2 Starlite/ChEMBL No references
Homo sapiens nuclear factor, erythroid 2-like 2 Starlite/ChEMBL No references
Equus caballus Ferritin light chain Starlite/ChEMBL No references
Influenza A virus Nonstructural protein 1 Starlite/ChEMBL No references
Homo sapiens GNAS complex locus Starlite/ChEMBL No references

Predicted pathogen targets for this compound

By orthology
Species Potential target Known druggable target/s Ortholog Group
Schistosoma japonicum Ubiquitin carboxyl-terminal hydrolase 8, putative Get druggable targets OG5_127431 All targets in OG5_127431
Leishmania donovani ubiquitin carboxyl-terminal hydrolase, putative Get druggable targets OG5_127431 All targets in OG5_127431
Echinococcus multilocularis ubiquitin carboxyl terminal hydrolase 8 Get druggable targets OG5_127431 All targets in OG5_127431
Giardia lamblia Ubiquitin carboxyl-terminal hydrolase 4 Get druggable targets OG5_127431 All targets in OG5_127431
Loa Loa (eye worm) hypothetical protein Get druggable targets OG5_127431 All targets in OG5_127431
Schistosoma japonicum ko:K04632 guanine nucleotide binding protein (G protein), alpha stimulating, putative Get druggable targets OG5_131088 All targets in OG5_131088
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) Get druggable targets OG5_131088 All targets in OG5_131088
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) Get druggable targets OG5_131088 All targets in OG5_131088
Schistosoma japonicum hypothetical protein Get druggable targets OG5_127431 All targets in OG5_127431
Trichomonas vaginalis Clan CA, family C19, ubiquitin hydrolase-like cysteine peptidase Get druggable targets OG5_127431 All targets in OG5_127431
Echinococcus granulosus ubiquitin carboxyl terminal hydrolase 8 Get druggable targets OG5_127431 All targets in OG5_127431
Trypanosoma cruzi ubiquitin carboxyl-terminal hydrolase, putative Get druggable targets OG5_127431 All targets in OG5_127431
Echinococcus granulosus guanine nucleotide binding protein Gs subunit Get druggable targets OG5_131088 All targets in OG5_131088
Leishmania braziliensis ubiquitin hydrolase, putative,cysteine peptidase, Clan CA, family C19, putative Get druggable targets OG5_127431 All targets in OG5_127431
Candida albicans ubiquitin-specific protease Get druggable targets OG5_127431 All targets in OG5_127431
Leishmania major ubiquitin hydrolase, putative,cysteine peptidase, Clan CA, family C19, putative Get druggable targets OG5_127431 All targets in OG5_127431
Echinococcus multilocularis guanine nucleotide binding protein G(s) subunit Get druggable targets OG5_131088 All targets in OG5_131088
Trichomonas vaginalis Clan CA, family C19, ubiquitin hydrolase-like cysteine peptidase Get druggable targets OG5_127431 All targets in OG5_127431
Entamoeba histolytica ubiquitin carboxyl-terminal hydrolase domain containing protein Get druggable targets OG5_127431 All targets in OG5_127431
Cryptosporidium parvum ubiquitin C-terminal hydrolase of the cysteine proteinase fold Get druggable targets OG5_127431 All targets in OG5_127431
Schistosoma japonicum ko:K01072 ubiquitin thiolesterase [EC3.1.2.15], putative Get druggable targets OG5_127431 All targets in OG5_127431
Schistosoma japonicum IPR001394,Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2,domain-containing Get druggable targets OG5_127431 All targets in OG5_127431
Trypanosoma brucei gambiense ubiquitin carboxyl-terminal hydrolase, putative,cysteine peptidase, Clan CA, family C19, putative Get druggable targets OG5_127431 All targets in OG5_127431
Schistosoma mansoni ubiquitin-specific peptidase 2 (C19 family) Get druggable targets OG5_127431 All targets in OG5_127431
Brugia malayi GTP-binding regulatory protein Gs alpha-S chain, putative Get druggable targets OG5_131088 All targets in OG5_131088
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) Get druggable targets OG5_131088 All targets in OG5_131088
Echinococcus granulosus guanine nucleotide binding protein Gs subunit Get druggable targets OG5_131088 All targets in OG5_131088
Loa Loa (eye worm) GTP-binding regulatory protein Gs alpha-S chain Get druggable targets OG5_131088 All targets in OG5_131088
Trypanosoma cruzi ubiquitin carboxyl-terminal hydrolase, putative Get druggable targets OG5_127431 All targets in OG5_127431
Brugia malayi Ubiquitin carboxyl-terminal hydrolase family protein Get druggable targets OG5_127431 All targets in OG5_127431
Schistosoma japonicum Ubiquitin carboxyl-terminal hydrolase 8, putative Get druggable targets OG5_127431 All targets in OG5_127431
Schistosoma japonicum IPR015063,Domain of unknown function DUF1873,domain-containing Get druggable targets OG5_127431 All targets in OG5_127431
Echinococcus granulosus ubiquitin specific protease 41 Get druggable targets OG5_127431 All targets in OG5_127431
Trypanosoma congolense ubiquitin carboxyl-terminal hydrolase, putative Get druggable targets OG5_127431 All targets in OG5_127431
Cryptosporidium hominis ubiquitin specific protease 66 Get druggable targets OG5_127431 All targets in OG5_127431
Schistosoma japonicum expressed protein Get druggable targets OG5_127431 All targets in OG5_127431
Echinococcus multilocularis guanine nucleotide binding protein G(s) subunit Get druggable targets OG5_131088 All targets in OG5_131088
Leishmania infantum ubiquitin hydrolase, putative,cysteine peptidase, Clan CA, family C19, putative Get druggable targets OG5_127431 All targets in OG5_127431
Echinococcus granulosus Peptidase C19 ubiquitin carboxyl terminal hydrolase 2 Get druggable targets OG5_127431 All targets in OG5_127431
Leishmania mexicana ubiquitin hydrolase, putative,cysteine peptidase, Clan CA, family C19, putative Get druggable targets OG5_127431 All targets in OG5_127431
Trichomonas vaginalis conserved hypothetical protein Get druggable targets OG5_127431 All targets in OG5_127431
Trypanosoma brucei ubiquitin carboxyl-terminal hydrolase, putative Get druggable targets OG5_127431 All targets in OG5_127431
Schistosoma mansoni ubiquitin-specific peptidase 8 (C19 family) Get druggable targets OG5_127431 All targets in OG5_127431
Echinococcus multilocularis ubiquitin specific protease 41 Get druggable targets OG5_127431 All targets in OG5_127431
Echinococcus multilocularis Peptidase C19, ubiquitin carboxyl terminal hydrolase 2 Get druggable targets OG5_127431 All targets in OG5_127431

By sequence similarity to non orthologous known druggable targets
Species Potential target Known druggable target Length Alignment span Identity
Schistosoma mansoni ferritin Ferritin light chain   175 aa 171 aa 44.4 %
Plasmodium falciparum ubiquitin specific protease, putative ubiquitin specific peptidase 2 362 aa 378 aa 25.7 %
Schistosoma japonicum Ferritin, putative Ferritin light chain   175 aa 144 aa 24.3 %
Schistosoma mansoni apoferritin-2 Ferritin light chain   175 aa 142 aa 29.6 %
Schistosoma mansoni GTP-binding protein alpha subunit gna GNAS complex locus 394 aa 450 aa 28.7 %
Schistosoma mansoni apoferritin-2 Ferritin light chain   175 aa 146 aa 28.8 %
Mycobacterium tuberculosis Hypothetical protein Nonstructural protein 1   230 aa 202 aa 23.8 %
Echinococcus multilocularis expressed protein Ferritin light chain   175 aa 146 aa 30.1 %
Schistosoma mansoni ferritin Ferritin light chain   175 aa 171 aa 43.9 %
Echinococcus granulosus expressed protein Ferritin light chain   175 aa 146 aa 28.8 %

Obtained from network model

Ranking Plot


Putative Targets List


Species Potential target Raw Global Species
Echinococcus multilocularis WNT 0.0272 0.4512 0.6259
Schistosoma mansoni wnt related 0.0272 0.4512 0.6259
Schistosoma mansoni wnt related 0.0272 0.4512 0.6259
Trypanosoma brucei ubiquitin carboxyl-terminal hydrolase, putative 0.0045 0 0.5
Echinococcus granulosus secreted frizzled protein 5 0.0141 0.1907 0.2645
Echinococcus granulosus frizzled 0.0141 0.1907 0.2645
Echinococcus multilocularis wnt family member wnt11 2 0.0272 0.4512 0.6259
Echinococcus multilocularis netrin 1 0.0408 0.7208 1
Echinococcus multilocularis smoothened 0.0141 0.1907 0.2645
Echinococcus multilocularis wingless type MMTV integration site family 0.0272 0.4512 0.6259
Echinococcus multilocularis frizzled 10 0.0141 0.1907 0.2645
Loa Loa (eye worm) hypothetical protein 0.0272 0.4512 0.6259
Loa Loa (eye worm) hypothetical protein 0.0272 0.4512 0.6259
Echinococcus multilocularis protein Wnt 2 0.0272 0.4512 0.6259
Brugia malayi Frizzled/Smoothened family membrane region containing protein 0.0141 0.1907 0.2645
Brugia malayi wnt family protein 0.0272 0.4512 0.6259
Echinococcus multilocularis secreted frizzled protein 0.0141 0.1907 0.2645
Brugia malayi wnt family protein 0.0272 0.4512 0.6259
Loa Loa (eye worm) wnt-4 protein 0.0272 0.4512 0.6259
Echinococcus granulosus frizzled 0.0141 0.1907 0.2645
Trypanosoma cruzi ubiquitin carboxyl-terminal hydrolase, putative 0.0045 0 0.5
Brugia malayi Fz domain containing protein 0.0141 0.1907 0.2645
Brugia malayi GTP-binding regulatory protein Gs alpha-S chain, putative 0.0055 0.021 0.0291
Giardia lamblia Ubiquitin carboxyl-terminal hydrolase 4 0.0045 0 0.5
Echinococcus granulosus protein Wnt 1 0.0272 0.4512 0.6259
Trichomonas vaginalis Clan CA, family C19, ubiquitin hydrolase-like cysteine peptidase 0.0045 0 0.5
Schistosoma mansoni wnt related 0.0272 0.4512 0.6259
Loa Loa (eye worm) hypothetical protein 0.0141 0.1907 0.2645
Echinococcus multilocularis frizzled 5 0.0141 0.1907 0.2645
Echinococcus granulosus Protein Wnt-04 0.0272 0.4512 0.6259
Loa Loa (eye worm) hypothetical protein 0.0272 0.4512 0.6259
Echinococcus granulosus protein Wnt 2 0.0272 0.4512 0.6259
Brugia malayi Unc-6 protein precursor 0.0408 0.7208 1
Schistosoma mansoni wnt inhibitor frzb2 0.0141 0.1907 0.2645
Echinococcus multilocularis guanine nucleotide binding protein G(s) subunit 0.0055 0.021 0.0291
Echinococcus multilocularis frizzled 0.0141 0.1907 0.2645
Schistosoma mansoni netrin 0.0408 0.7208 1
Brugia malayi Wnt-4 protein precursor 0.0272 0.4512 0.6259
Schistosoma mansoni netrin 0.0408 0.7208 1
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) 0.0055 0.021 0.0291
Loa Loa (eye worm) frizzled/Smoothened family membrane region containing protein 0.0141 0.1907 0.2645
Entamoeba histolytica ubiquitin carboxyl-terminal hydrolase domain containing protein 0.0045 0 0.5
Loa Loa (eye worm) CWN-2 protein 0.0272 0.4512 0.6259
Trichomonas vaginalis conserved hypothetical protein 0.0045 0 0.5
Loa Loa (eye worm) Wnt2 protein 0.0272 0.4512 0.6259
Schistosoma mansoni wnt-5 0.0272 0.4512 0.6259
Schistosoma mansoni frizzled-like receptor 0.0141 0.1907 0.2645
Schistosoma mansoni wnt related 0.0272 0.4512 0.6259
Echinococcus granulosus netrin 1 0.0408 0.7208 1
Echinococcus granulosus frizzled 5 0.0141 0.1907 0.2645
Echinococcus granulosus guanine nucleotide binding protein Gs subunit 0.0055 0.021 0.0291
Schistosoma mansoni frizzled-like receptor 0.0141 0.1907 0.2645
Loa Loa (eye worm) frizzled/Smoothened family membrane region containing protein 0.0141 0.1907 0.2645
Echinococcus granulosus Protein Wnt-11b 0.0272 0.4512 0.6259
Brugia malayi Fz domain containing protein 0.0141 0.1907 0.2645
Schistosoma mansoni frizzled 0.0141 0.1907 0.2645
Echinococcus granulosus smoothened 0.0141 0.1907 0.2645
Echinococcus granulosus guanine nucleotide binding protein Gs subunit 0.0055 0.021 0.0291
Brugia malayi wnt family protein 0.0272 0.4512 0.6259
Loa Loa (eye worm) sfrp2 0.0141 0.1907 0.2645
Echinococcus multilocularis WNT 0.0272 0.4512 0.6259
Leishmania major ubiquitin hydrolase, putative,cysteine peptidase, Clan CA, family C19, putative 0.0045 0 0.5
Brugia malayi Wnt-2 protein precursor 0.0272 0.4512 0.6259
Brugia malayi Frizzled/Smoothened family membrane region containing protein 0.0141 0.1907 0.2645
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) 0.0055 0.021 0.0291
Schistosoma mansoni secreted frizzled-related protein 0.0141 0.1907 0.2645
Echinococcus granulosus frizzled 4 0.0141 0.1907 0.2645
Echinococcus granulosus secreted frizzled protein 0.0141 0.1907 0.2645
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) 0.0055 0.021 0.0291
Echinococcus granulosus Protein Wnt-5 0.0272 0.4512 0.6259
Loa Loa (eye worm) hypothetical protein 0.0141 0.1907 0.2645
Loa Loa (eye worm) hypothetical protein 0.0272 0.4512 0.6259
Loa Loa (eye worm) hypothetical protein 0.0408 0.7208 1
Trypanosoma cruzi ubiquitin carboxyl-terminal hydrolase, putative 0.0045 0 0.5
Echinococcus multilocularis frizzled 0.0141 0.1907 0.2645
Loa Loa (eye worm) GTP-binding regulatory protein Gs alpha-S chain 0.0055 0.021 0.0291
Brugia malayi wnt family protein 0.0272 0.4512 0.6259
Echinococcus multilocularis protein Wnt 1 0.0272 0.4512 0.6259
Echinococcus multilocularis guanine nucleotide binding protein G(s) subunit 0.0055 0.021 0.0291
Echinococcus multilocularis secreted frizzled protein 0.0141 0.1907 0.2645
Echinococcus multilocularis secreted frizzled protein 5 0.0141 0.1907 0.2645
Echinococcus granulosus frizzled 0.0141 0.1907 0.2645
Echinococcus multilocularis frizzled 4 0.0141 0.1907 0.2645
Trichomonas vaginalis Clan CA, family C19, ubiquitin hydrolase-like cysteine peptidase 0.0045 0 0.5
Loa Loa (eye worm) hypothetical protein 0.0272 0.4512 0.6259
Echinococcus granulosus Protein Wnt-111 0.0272 0.4512 0.6259

Activities

Activity type Activity value Assay description Source Reference
Potency (functional) 8.1995 uM PUBCHEM_BIOASSAY: Nrf2 qHTS screen for inhibitors. (Class of assay: confirmatory) [Related pubchem assays (depositor defined):AID493153, AID493163, AID504648] ChEMBL. No reference
Potency (functional) 9.285 uM PUBCHEM_BIOASSAY: Primary qHTS for delayed death inhibitors of the malarial parasite plastid, 48 hour incubation. (Class of assay: confirmatory) [Related pubchem assays (depositor defined):AID488752, AID488774, AID504848, AID504850] ChEMBL. No reference
Potency (functional) = 10 um PUBCHEM_BIOASSAY: qHTS Assay for Inhibitors of Influenza NS1 Protein Function. (Class of assay: confirmatory) ChEMBL. No reference
Potency (binding) = 10 um PUBCHEM_BIOASSAY: qHTS Assay for Identification of Novel General Anesthetics. In this assay, a GABAergic mimetic model system, apoferritin and a profluorescent 1-aminoanthracene ligand (1-AMA), was used to construct a competitive binding assay for identification of novel general anesthetics (Class of assay: confirmatory) [Related pubchem assays: 2385 (Probe Development Summary for Identification of Novel General Anesthetics), 2323 (Validation apoferritin assay run on SigmaAldrich LOPAC1280 collection)] ChEMBL. No reference
Potency (functional) 11.2202 uM PubChem BioAssay. qHTS for Agonist of gsp, the Etiologic Mutation Responsible for Fibrous Dysplasia/McCune-Albright Syndrome: qHTS. (Class of assay: confirmatory) ChEMBL. No reference
Potency (functional) = 12.5893 um PUBCHEM_BIOASSAY: qHTS Assay for Inhibitors of Ubiquitin-specific Protease USP2a. (Class of assay: confirmatory) ChEMBL. No reference
Potency (functional) 13.1154 uM PUBCHEM_BIOASSAY: Primary qHTS for delayed death inhibitors of the malarial parasite plastid, 96 hour incubation. (Class of assay: confirmatory) [Related pubchem assays (depositor defined):AID488745, AID488752, AID488774, AID504848, AID504850] ChEMBL. No reference
Potency (functional) = 25.1189 um PUBCHEM_BIOASSAY: qHTS Assay for Agonists of the Thyroid Stimulating Hormone Receptor. (Class of assay: confirmatory) ChEMBL. No reference
Potency (functional) = 25.1189 um PUBCHEM_BIOASSAY: qHTS Assay for Agonists of the Thyroid Stimulating Hormone Receptor: Activators of Intracellular cAMP Concentrations in Parental HEK 293. (Class of assay: confirmatory) ChEMBL. No reference
Potency (functional) 25.929 uM PUBCHEM_BIOASSAY: qHTS screen for small molecules that inhibit ELG1-dependent DNA repair in human embryonic kidney (HEK293T) cells expressing luciferase-tagged ELG1. (Class of assay: confirmatory) [Related pubchem assays (depositor defined):AID493107, AID493125] ChEMBL. No reference
Potency (functional) = 28.1838 um PUBCHEM_BIOASSAY: qHTS Multiplex Assay to Identify Dual Action Probes in a Cell Model of Huntington: Aggregate Formation (GFP). (Class of assay: confirmatory) [Related pubchem assays: 1482, 1471 ] ChEMBL. No reference
Potency (functional) = 31.6228 um PUBCHEM_BIOASSAY: qHTS Assay for Identifying the Cell-Membrane Permeable IMPase Inhibitors: Potentiation with Lithium. (Class of assay: confirmatory) [Related pubchem assays: 901 ] ChEMBL. No reference
Potency (functional) = 39.8107 um PUBCHEM_BIOASSAY: qHTS Assay for Promiscuous and Specific Inhibitors of Cruzain (without detergent). (Class of assay: confirmatory) [Related pubchem assays: 2158 (Confirmation qHTS Assay for Inhibitors of Cruzain), 2249 (Probe Development Summary of Promiscuous Inhibitors (Artifacts) of Cruzain), 2161 (qHTS Assay for Inhibitors of Papain: Counterscreen for Cruzain Assay), 1478 (qHTS Assay for Promiscuous and Specific Inhibitors of Cruzain (with detergent))] ChEMBL. No reference
Potency (functional) 56.2341 uM PUBCHEM_BIOASSAY: qHTS Assay for Inhibitors of BAZ2B. (Class of assay: confirmatory) [Related pubchem assays (depositor defined):AID504391] ChEMBL. No reference
Potency (functional) 89.1251 uM PUBCHEM_BIOASSAY: qHTS for Inhibitors of Polymerase Iota. (Class of assay: confirmatory) [Related pubchem assays (depositor defined):AID588623] ChEMBL. No reference

Phenotypes

Whole-cell/tissue/organism interactions

Species name Source Reference Is orphan
Plasmodium falciparum ChEMBL23

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

No literature references available for this target.

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