Detailed information for compound 18896

Basic information

Technical information
  • TDR Targets ID: 18896
  • Name: 2-(4-benzylpiperazin-1-yl)-1-(2-ethoxyethyl)b enzimidazole
  • MW: 364.484 | Formula: C22H28N4O
  • H donors: 0 H acceptors: 1 LogP: 3.35 Rotable bonds: 7
    Rule of 5 violations (Lipinski): 1
  • SMILES: CCOCCn1c(nc2c1cccc2)N1CCN(CC1)Cc1ccccc1
  • InChi: 1S/C22H28N4O/c1-2-27-17-16-26-21-11-7-6-10-20(21)23-22(26)25-14-12-24(13-15-25)18-19-8-4-3-5-9-19/h3-11H,2,12-18H2,1H3
  • InChiKey: GEDWDORUFBMJEJ-UHFFFAOYSA-N  

Network

Hover on a compound node to display the structore

Synonyms

  • 2-(4-benzyl-1-piperazinyl)-1-(2-ethoxyethyl)benzimidazole
  • 1-(2-ethoxyethyl)-2-[4-(phenylmethyl)piperazin-1-yl]benzimidazole
  • 2-(4-benzylpiperazino)-1-(2-ethoxyethyl)benzimidazole
  • 1-(2-ethoxyethyl)-2-[4-(phenylmethyl)-1-piperazinyl]benzimidazole
  • 2-[4-(benzyl)piperazin-1-yl]-1-(2-ethoxyethyl)benzimidazole

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Cavia porcellus Histamine H1 receptor Starlite/ChEMBL References

Predicted pathogen targets for this compound

By orthology
No druggable targets predicted by orthology data
By sequence similarity to non orthologous known druggable targets
Species Potential target Known druggable target Length Alignment span Identity
Echinococcus multilocularis serotonin receptor Histamine H1 receptor   488 aa 450 aa 26.0 %
Onchocerca volvulus Glycoprotein hormone beta 5 homolog Histamine H1 receptor   488 aa 482 aa 25.1 %
Schistosoma mansoni biogenic amine receptor Histamine H1 receptor   488 aa 487 aa 25.5 %
Schistosoma mansoni ancient conserved domain protein 2 (cyclin m2) Histamine H1 receptor   488 aa 463 aa 26.6 %
Schistosoma mansoni biogenic amine (dopamine) receptor Histamine H1 receptor   488 aa 498 aa 26.1 %
Schistosoma mansoni muscarinic acetylcholine (GAR) receptor Histamine H1 receptor   488 aa 488 aa 26.6 %
Schistosoma japonicum ko:K04145 dopamine receptor D2, putative Histamine H1 receptor   488 aa 470 aa 26.0 %
Onchocerca volvulus RB1-inducible coiled-coil protein 1 homolog Histamine H1 receptor   488 aa 486 aa 26.5 %
Echinococcus granulosus biogenic amine 5HT receptor Histamine H1 receptor   488 aa 484 aa 26.9 %
Echinococcus granulosus alpha 1A adrenergic receptor Histamine H1 receptor   488 aa 455 aa 19.1 %
Loa Loa (eye worm) TYRA-2 protein Histamine H1 receptor   488 aa 489 aa 23.7 %
Echinococcus granulosus biogenic amine 5HT receptor Histamine H1 receptor   488 aa 455 aa 25.5 %
Schistosoma mansoni biogenic amine (dopamine) receptor Histamine H1 receptor   488 aa 471 aa 24.8 %
Echinococcus multilocularis biogenic amine (5HT) receptor Histamine H1 receptor   488 aa 485 aa 26.4 %
Schistosoma japonicum Octopamine receptor, putative Histamine H1 receptor   488 aa 472 aa 25.8 %
Echinococcus multilocularis alpha 1A adrenergic receptor Histamine H1 receptor   488 aa 454 aa 19.4 %

Obtained from network model

Ranking Plot


Putative Targets List


Species Potential target Raw Global Species
Loa Loa (eye worm) thymidylate synthase 0.1002 0.5 0.5
Schistosoma mansoni bifunctional dihydrofolate reductase-thymidylate synthase 0.1002 0.5 0.5
Plasmodium falciparum bifunctional dihydrofolate reductase-thymidylate synthase 0.1002 0.5 0.5
Trypanosoma brucei dihydrofolate reductase-thymidylate synthase 0.1002 0.5 0.5
Echinococcus multilocularis thymidylate synthase 0.1002 0.5 0.5
Mycobacterium tuberculosis Probable thymidylate synthase ThyA (ts) (TSASE) 0.1002 0.5 0.5
Leishmania major dihydrofolate reductase-thymidylate synthase 0.1002 0.5 0.5
Echinococcus granulosus thymidylate synthase 0.1002 0.5 0.5
Trypanosoma cruzi dihydrofolate reductase-thymidylate synthase 0.1002 0.5 0.5
Mycobacterium ulcerans thymidylate synthase 0.1002 0.5 0.5
Mycobacterium leprae PROBABLE THYMIDYLATE SYNTHASE THYA (TS) (TSASE) 0.1002 0.5 0.5
Plasmodium vivax bifunctional dihydrofolate reductase-thymidylate synthase, putative 0.1002 0.5 0.5
Onchocerca volvulus 0.1002 0.5 0.5
Toxoplasma gondii bifunctional dihydrofolate reductase-thymidylate synthase 0.1002 0.5 0.5

Activities

Activity type Activity value Assay description Source Reference
ED50 (functional) = 0.039 mg kg-1 In vivo for the inhibition of histamine-induced mortality in guinea pig ChEMBL. 2879912
IC50 (functional) = 0.027 uM Compound was tested in vitro for the inhibition of histamine-induced contractions in guinea pig ileum ChEMBL. 2879912
IC50 (functional) = 0.027 uM Compound was tested in vitro for the inhibition of histamine-induced contractions in guinea pig ileum ChEMBL. 2879912

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

1 literature reference was collected for this gene.

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