Detailed information for compound 346472

Basic information

Technical information
  • TDR Targets ID: 346472
  • Name: 4-(4-pentylphenyl)benzoic acid
  • MW: 268.35 | Formula: C18H20O2
  • H donors: 1 H acceptors: 2 LogP: 5.5 Rotable bonds: 6
    Rule of 5 violations (Lipinski): 1
  • SMILES: CCCCCc1ccc(cc1)c1ccc(cc1)C(=O)O
  • InChi: 1S/C18H20O2/c1-2-3-4-5-14-6-8-15(9-7-14)16-10-12-17(13-11-16)18(19)20/h6-13H,2-5H2,1H3,(H,19,20)
  • InChiKey: VRGQQLFRUKMDSW-UHFFFAOYSA-N  

Network

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Synonyms

  • 4-(4-amylphenyl)benzoic acid
  • 4'-Pentyl-biphenyl-4-carboxylic acid
  • BAS 00511643
  • EU-0000039
  • ST002073

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Homo sapiens retinoic acid receptor, beta Starlite/ChEMBL References

Predicted pathogen targets for this compound

By orthology
Species Potential target Known druggable target/s Ortholog Group
Onchocerca volvulus Steroid hormone receptor family member cnr14 homolog Get druggable targets OG5_131607 All targets in OG5_131607
Brugia malayi nuclear hormone receptor Get druggable targets OG5_131607 All targets in OG5_131607
Loa Loa (eye worm) hypothetical protein Get druggable targets OG5_131607 All targets in OG5_131607
Loa Loa (eye worm) nuclear receptor nhr-7B Get druggable targets OG5_131607 All targets in OG5_131607

By sequence similarity to non orthologous known druggable targets
No druggable targets predicted by sequence similarity

Obtained from network model

Ranking Plot


Putative Targets List


Species Potential target Raw Global Species
Schistosoma mansoni thyroid hormone receptor 0.0249 0.2192 0.2418
Schistosoma mansoni retinoid-x-receptor (RXR) 0.0249 0.2192 0.2418
Schistosoma mansoni nuclear hormone receptor superfamily protein-related 0.0475 0.9063 1
Echinococcus granulosus ecdysone induced protein 78C 0.0249 0.2192 0.5
Schistosoma mansoni photoreceptor-specific nuclear receptor related 0.0249 0.2192 0.2418
Echinococcus multilocularis hepatocyte nuclear factor 4 alpha 0.0249 0.2192 0.5
Echinococcus multilocularis nuclear receptor 2DBD gamma 0.0249 0.2192 0.5
Echinococcus granulosus FTZ F1 alpha 0.0249 0.2192 0.5
Schistosoma mansoni Tr4/Tr2 (homologue) 0.0249 0.2192 0.2418
Echinococcus granulosus Nuclear hormone receptor family member nhr 41 0.0249 0.2192 0.5
Echinococcus multilocularis FTZ F1 nuclear receptor protein 0.0249 0.2192 0.5
Schistosoma mansoni nuclear receptor 2DBD-gamma 0.0249 0.2192 0.2418
Echinococcus granulosus hepatocyte nuclear factor 4 alpha 0.0249 0.2192 0.5
Trypanosoma brucei RNA helicase, putative 0.0177 0 0.5
Echinococcus granulosus FTZ F1 nuclear receptor protein 0.0249 0.2192 0.5
Schistosoma mansoni coup transcription factor 0.0249 0.2192 0.2418
Schistosoma mansoni nuclear hormone receptor nor-1/nor-2 0.0249 0.2192 0.2418
Schistosoma mansoni retinoic acid receptor RXR 0.0249 0.2192 0.2418
Loa Loa (eye worm) nuclear receptor nhr-7B 0.0374 0.5996 1
Schistosoma mansoni FTZ-F1 nuclear receptor-like protein 0.0249 0.2192 0.2418
Echinococcus multilocularis nuclear receptor 2DBD gamma 0.0249 0.2192 0.5
Brugia malayi nuclear hormone receptor 0.0374 0.5996 1
Echinococcus multilocularis ecdysone induced protein 78C 0.0249 0.2192 0.5
Echinococcus granulosus nuclear receptor 2DBD gamma 0.0249 0.2192 0.5
Echinococcus multilocularis Nuclear hormone receptor family member nhr 41 0.0249 0.2192 0.5
Echinococcus multilocularis COUP TF:Svp nuclear hormone receptor 0.0249 0.2192 0.5
Echinococcus granulosus nuclear receptor 2DBD gamma 0.0249 0.2192 0.5
Schistosoma mansoni steroid hormone receptor ad4bp 0.0249 0.2192 0.2418
Echinococcus granulosus COUP TF:Svp nuclear hormone receptor 0.0249 0.2192 0.5
Schistosoma mansoni RAR-like nuclear receptor 0.0249 0.2192 0.2418
Echinococcus multilocularis FTZ F1 alpha 0.0249 0.2192 0.5
Schistosoma mansoni nuclear hormone receptor 0.0249 0.2192 0.2418
Loa Loa (eye worm) hypothetical protein 0.0256 0.2421 0.0602
Echinococcus multilocularis thyroid hormone receptor alpha 0.0249 0.2192 0.5
Schistosoma mansoni thyroid hormone receptor 0.0249 0.2192 0.2418
Echinococcus granulosus retinoic acid receptor rxr beta a 0.0249 0.2192 0.5

Activities

Activity type Activity value Assay description Source Reference
EC50 (functional) = -7.8 Transcriptional activity against RARbeta2 ChEMBL. 16302793
EC50 (functional) > -5 Transcriptional activity against RARbeta1 ChEMBL. 16302793
Efficacy (binding) 0 Efficacy against RARbeta1 ChEMBL. 16302793
Efficacy (binding) = 38 % Efficacy against RARbeta2 ChEMBL. 16302793
Efficacy (binding) = 38 % Efficacy against RARbeta2 ChEMBL. 16302793
Log EC50 (functional) > 5 Transcriptional activity against RARbeta1 ChEMBL. 16302793
Log EC50 (functional) = 7.8 Transcriptional activity against RARbeta2 ChEMBL. 16302793

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

1 literature reference was collected for this gene.

If you have references for this compound, please enter them in a user comment (below) or Contact us.