Detailed view for Bm1_04725

Basic information

TDR Targets ID: 234229
Brugia malayi, Helix-loop-helix DNA-binding domain containing protein
Source Database / ID:  GenBank

pI: 9.7478 | Length (AA): 145 | MW (Da): 15450 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00010   Helix-loop-helix DNA-binding domain

Gene Ontology

Mouse over links to read term descriptions.
GO:0005634   nucleus  
GO:0046983   protein dimerization activity  
GO:0030528   transcription regulator activity  
GO:0045449   regulation of transcription  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 2 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
80 145 2ypa (B) 539 602 61.00 0.0019 0.73 1.18837 -1.1
92 145 3u5v (A) 7 58 65.00 0.0000000000062 0.96 1.19111 -1.12

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_130442)

Species Accession Gene Product
Brugia malayi Bm1_04725   Helix-loop-helix DNA-binding domain containing protein
Caenorhabditis elegans CELE_M05B5.5   Protein HLH-2, isoform A
Drosophila melanogaster Dmel_CG5102   daughterless
Homo sapiens ENSG00000196628   transcription factor 4
Homo sapiens ENSG00000140262   transcription factor 12
Homo sapiens ENSG00000071564   transcription factor 3
Loa Loa (eye worm) LOAG_12711   hypothetical protein
Mus musculus ENSMUSG00000053477   transcription factor 4
Mus musculus ENSMUSG00000032228   transcription factor 12
Mus musculus ENSMUSG00000020167   transcription factor 3
Onchocerca volvulus OVOC12718  
Onchocerca volvulus OVOC120  

Essentiality

Bm1_04725 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
CELE_M05B5.5 Caenorhabditis elegans embryonic lethal wormbase
CELE_M05B5.5 Caenorhabditis elegans larval lethal wormbase
CELE_M05B5.5 Caenorhabditis elegans sterile wormbase
Show/Hide essentiality data references
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Homo sapiens transcription factor 4 Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0172 0.2526 1
0.0059 0.4674 0.5824
0.0207313 0.294694 0.490799
0.0147 0.4156 0.6232
0.0111 0.4628 0.5824
0.0059 0.4628 0.5824
0.0239832 0.509215 1

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier Bm1_04725 (Brugia malayi), Helix-loop-helix DNA-binding domain containing protein
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