pI: 5.6379 |
Length (AA): 792 |
MW (Da): 88087 |
Paralog Number:
0
Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Modbase 3D models:
There are 3 models calculated for this protein. More info on
these models, including the
models themselves is available at:
Modbase
Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
---|---|---|---|---|---|---|---|---|---|
2 | 758 | 4ktp (A) | 4 | 760 | 23.00 | 0 | 1 | 1.18621 | -0.13 |
7 | 760 | 1h54 (A) | 5 | 743 | 32.00 | 0 | 1 | 1.29802 | -0.03 |
10 | 750 | 3wir (A) | 6 | 756 | 28.00 | 0 | 1 | 1.25201 | -0.32 |
Help me make sense of these data.
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
Ortholog group members (OG5_129495)
Species | Accession | Gene Product |
---|---|---|
Candida albicans | CaO19.13595 | Vacuolar acid trehalase (alpha, alpha-trehalase) |
Candida albicans | CaO19.6214 | Vacuolar acid trehalase (alpha, alpha-trehalase) |
Dictyostelium discoideum | DDB_G0287109 | acid trehalase-like protein 1 |
Drosophila melanogaster | Dmel_CG16965 | CG16965 gene product from transcript CG16965-RC |
Escherichia coli | b1316 | putative family 65 glycosyl hydrolase |
Homo sapiens | ENSG00000142102 | ATH1, acid trehalase-like 1 (yeast) |
Leishmania braziliensis | LbrM.35.5490 | glycosyl hydrolase, putative |
Leishmania donovani | LdBPK_365470.1 | glycosyl hydrolase, putative |
Leishmania infantum | LinJ.36.5470 | glycosyl hydrolase, putative |
Leishmania major | LmjF.36.5240 | glycosyl hydrolase, putative |
Leishmania mexicana | LmxM.36.5240 | glycosyl hydrolase, putative |
Mycobacterium leprae | ML0392c | Possible hydrolase |
Mus musculus | ENSMUSG00000062031 | ATH1, acid trehalase-like 1 (yeast) |
Mycobacterium tuberculosis | Rv3401 | Conserved protein |
Mycobacterium ulcerans | MUL_0906 | glycosyl hydrolase |
Saccharomyces cerevisiae | YPR026W | alpha,alpha-trehalase ATH1 |
Schmidtea mediterranea | mk4.006624.00 | |
Schmidtea mediterranea | mk4.000843.07 | Acid trehalase-like protein 1 |
Trypanosoma brucei gambiense | Tbg972.11.11970 | glycosyl hydrolase, putative |
Trypanosoma brucei | Tb927.11.10670 | glycosyl hydrolase, putative |
Trypanosoma congolense | TcIL3000.11.11340 | glycosyl hydrolase, putative |
Trypanosoma cruzi | TcCLB.506155.120 | glycosyl hydrolase, putative |
Gene/Ortholog | Organism | Phenotype | Source Study |
---|---|---|---|
mtu3462 | Mycobacterium tuberculosis | non-essential | nmpdr |
Tb11.01.2440 | Trypanosoma brucei | no significant loss or gain of fitness in bloodstream forms (3 days) | alsford |
Tb11.01.2440 | Trypanosoma brucei | no significant loss or gain of fitness in bloodstream forms (6 days) | alsford |
Tb11.01.2440 | Trypanosoma brucei | significant loss of fitness in procyclic forms | alsford |
Tb11.01.2440 | Trypanosoma brucei | no significant loss or gain of fitness in differentiation of procyclic to bloodstream forms | alsford |
b1316 | Escherichia coli | non-essential | goodall |
nmpdr | Genome-scale essentiality datasets from published studies (M. tuberculosis) | National Microbial Pathogen Data Resource |
blattner | Systematic mutagenesis of the E. coli (MG1655) genome | J Bacteriol 2004, 186:4921-4930 |
gerdes | Experimental determination and system-level analysis of essential genes in E. coli MG1655 | Gerdes et al., J Bacteriol. 2003 185:5673-84 |
yeastgenome | Systematic deletion of yeast genes | Saccharomyces Genome Database |
keio | Systematic single-gene knock-out mutants of E. coli K12 | The Keio Collection |
neb | C. elegans RNAi phenotypes | Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs |
shigen | Profiling of E. coli Chromosome (PEC) | National Institute of Genetics, Japan |
wormbase | C. elegans RNAi experiments | WormBase web site, http://www.wormbase.org, release WS170 |
alsford | High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome | Genome Res 2011, 21:915-924 |
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.
Species | Known druggable target | Linked compounds | Reference |
---|---|---|---|
Saccharomyces cerevisiae | alpha,alpha-trehalase ATH1 | Compounds | References |