Detailed view for PF3D7_1441300

Basic information

TDR Targets ID: 2723
Plasmodium falciparum, serine/threonine protein kinase, putative
Source Database / ID:  PlasmoDB   |   GeneDB   |   MPMP

pI: 8.977 | Length (AA): 2247 | MW (Da): 263794 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG3

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00069   Protein kinase domain

Gene Ontology

Mouse over links to read term descriptions.
GO:0005575   cellular_component  
GO:0005524   ATP binding  
GO:0004713   protein tyrosine kinase activity  
GO:0004674   protein serine/threonine kinase activity  
GO:0004672   protein kinase activity  
GO:0006468   protein amino acid phosphorylation  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 15 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
13 602 1omw (A) 90 666 17.00 0 1 0.06 0.46
113 405 1mq4 (A) 127 387 28.00 0 1 0.47 -1.04
9 526 3pvu (A) 83 603 19.00 0.0000094 1 0.13823 1.09
117 420 3bhh (A) 12 296 27.00 0 1 0.388391 -0.12
117 602 3lij (A) 60 511 24.00 0 1 0.381388 0.06
117 413 4b6l (A) 60 327 34.00 0 1 0.460976 -0.42
122 368 2a19 (C) 270 528 37.00 0.002 1 -0.0882757 1.15
227 398 3enm (A) 162 311 34.00 0.0062 0.99 0.190347 0.42
1195 2054 3v0a (B) 177 1161 25.00 0.0002 0.83 0.249533 1.63
1752 2032 4o87 (A) 34 316 28.00 0.0097 0.16 -0.0731444 1.61
30 594 1ym7 (A) 106 652 16.00 0 0.74 0.0983464 1.27
82 438 4lqq (A) 324 710 28.00 0.000072 1 0.0925785 1.23
115 410 3fe3 (A) 52 317 37.00 0 1 0.441431 -0.13
142 401 4wno (A) 40 278 36.00 0 1 0.46741 -0.25
177 398 2y7j (A) 87 288 29.00 0.0000000000056 1 0.371498 -0.46

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Upper 80-100% percentile gametocyte, Female Gametocyte. PlasmoDB Lasonder E
Upregulation Percent Ranking Stage Dataset
Upper 60-80% percentile early schizont, late schizont. PlasmoDB
Upregulation Percent Ranking Stage Dataset
Mid 40-60% percentile intra-erythrocytic - 0 hs, intra-erythrocytic - 40 hs, intra-erythrocytic - 48 hs. Otto TD
Upregulation Percent Ranking Stage Dataset
Lower 20-40% percentile intra-erythrocytic - 8 hs, intra-erythrocytic - 16 hs, intra-erythrocytic - 32 hs, Oocyst, Ring, Sporozoite, Male Gametocyte. Otto TD Zanghi G Lasonder E
Upregulation Percent Ranking Stage Dataset
Lower 0-20% percentile intra-erythrocytic - 24 hs. Otto TD
Show/Hide expression data references
  • Otto TD New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq.
  • Zanghi G A Specific PfEMP1 Is Expressed in P. falciparum Sporozoites and Plays a Role in Hepatocyte Infection.
  • Lasonder E Integrated transcriptomic and proteomic analyses of P. falciparum gametocytes. Molecular insight into sex-specific processes and translational repression.
  • PlasmoDB Data on upregulation of P. falciparum genes in different life cycle stages, combined from several microarray experiments available in PlasmoDB

Orthologs

Ortholog group members (OG5_137359)

Species Accession Gene Product
Babesia bovis BBOV_III003210   protein kinase domain containing protein
Candida albicans CaO19.2781   probable Ser Thr protein kinase, similar to RCK2
Candida albicans CaO19.10297   probable Ser Thr protein kinase, similar to RCK2
Plasmodium berghei PBANKA_1305200   serine/threonine protein kinase, putative
Plasmodium falciparum PF3D7_1441300   serine/threonine protein kinase, putative
Plasmodium knowlesi PKNH_1241000   serine/threonine protein kinase, putative
Plasmodium vivax PVX_118425   serine/threonine protein kinase, putative
Plasmodium yoelii PY05864   hypothetical protein
Plasmodium yoelii PY05330   Protein kinase domain, putative
Theileria parva TP04_0122   serine/threonine protein kinase, putative

Essentiality

PF3D7_1441300 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
PBANKA_1305200 Plasmodium berghei Dispensable plasmo
Show/Hide essentiality data references
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Druggability index (range: 0 to 1): 0.5

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Oryctolagus cuniculus cAMP-dependent protein kinase alpha-catalytic subunit 351 aa 25.0% 288 aa Compounds References
Homo sapiens Cyclin-dependent kinase 1/cyclin B1 297 aa 25.2% 314 aa Compounds References
Rattus norvegicus Cell division protein kinase 5 292 aa 25.2% 313 aa Compounds References
Oryctolagus cuniculus Cyclin-dependent kinase 4 189 aa 27.9% 172 aa Compounds References
Rattus norvegicus Mitogen-activated protein kinase 1 358 aa 29.1% 320 aa Compounds References
Xenopus laevis Aurora kinase B-B 368 aa 25.7% 296 aa Compounds References
Patiria pectinifera Cdc2 300 aa 26.0% 312 aa Compounds References
Xenopus laevis Aurora kinase B-A 361 aa 25.7% 296 aa Compounds References
Bos taurus cAMP-dependent protein kinase alpha-catalytic subunit 351 aa 25.8% 295 aa Compounds References
Rattus norvegicus cAMP-dependent protein kinase alpha-catalytic subunit 351 aa 26.0% 288 aa Compounds References
Plasmodium falciparum (isolate 3D7) Cell division control protein 2 homolog 288 aa 31.2% 231 aa Compounds References
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0012 0.5 0.5
0.0067 0.5 0.5
0.0032 0.5 0.5
0.0039 0.9485 0.5
0.0093 0.8828 0
0.0081 1 0.5
0.0016 0.5 0.5
0.0003 0.5 0.5
0.0036 0.5 0.5
0.0059 1 1
0.0062 0.6935 0
0.0092 1 0.5
0.0016 0.5 0.5
0.0004 0.5 0.5
0.0088 0.4477 0.5
0.0027 1 0.5
0.0059 1 1
0.0007 0.5 0.5
0.0098 0.3242 0.2614
0.0033 1 1
0.0063 1 1
0.0018 0.5 0.5
0.0064 0.3377 0
0.0012 0.5 0.5
0.0023 0.5 0.5
0.0037 1 0.5
0.0066 0.3101 0
0.0056 1 0.5
0.0012 0.5 0.5
0.0039 0.5 0.5
0.0011 1 0.5
0.0008 0.5 0.5
0.0029 0.5 0.5
0.0039 0.5 0.5
0.0069 0.3067 1
0.0032 0.5 0.5
0.0063 0.7244 0.7244
0.0026 0.5 0.5
0.0022 0.5 0.5
0.0042 0.5 0.5
0.0091 1 0.5
0.0007 0.5 0.5
0.0033 0.5 0.5
0.0081 0.5 0.5
0.0007 0.5 0.5
0.0061 0.6883 1
0.0059 1 1

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

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User comments

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Gene identifier PF3D7_1441300 (Plasmodium falciparum), serine/threonine protein kinase, putative
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