Detailed view for Smp_160330

Basic information

TDR Targets ID: 289066
Schistosoma mansoni, dynein light chain
Source Database / ID:  GeneDB

pI: 4.8105 | Length (AA): 264 | MW (Da): 30433 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF12799   Leucine Rich repeats (2 copies)

Gene Ontology

Mouse over links to read term descriptions.
GO:0005515   protein binding  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 2 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
5 255 6mky (A) 119 358 22.00 0.000000000055 1 1.20886 -0.09
79 263 5yxm (A) 3 192 58.00 0 1 1.54486 -1.95

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_129790)

Species Accession Gene Product
Drosophila melanogaster Dmel_CG8800   CG8800 gene product from transcript CG8800-RA
Drosophila melanogaster Dmel_CG10839   CG10839 gene product from transcript CG10839-RB
Echinococcus granulosus EgrG_000448800   dynein light chain
Echinococcus multilocularis EmuJ_000448800   dynein light chain
Giardia lamblia GL50803_4463   Dynein light chain
Homo sapiens ENSG00000119661   dynein, axonemal, light chain 1
Leishmania braziliensis LbrM.24.1040   dynein light chain, putative
Leishmania donovani LdBPK_241050.1   dynein light chain, putative
Leishmania infantum LinJ.24.1050   dynein light chain, putative
Leishmania major LmjF.24.1030   dynein light chain, putative
Leishmania mexicana LmxM.24.1030   dynein light chain, putative
Mus musculus ENSMUSG00000042523   dynein, axonemal, light chain 1
Neospora caninum NCLIV_014880   hypothetical protein
Oryza sativa 4339238   Os05g0501600
Plasmodium berghei PBANKA_0708100   dynein light chain 1
Plasmodium falciparum PF3D7_0822500   dynein light chain 1
Plasmodium knowlesi PKNH_1316500   dynein light chain 1, putative
Schistosoma japonicum Sjp_0216100   ko:K10411 dynein light chain 1, axonemal, putative
Schistosoma mansoni Smp_160330   dynein light chain
Schmidtea mediterranea mk4.008733.01   Dynein light chain 1, axonemal
Trypanosoma brucei gambiense Tbg972.11.6400   dynein light chain, putative
Trypanosoma brucei Tb927.11.5680   dynein light chain 1, axonemal
Trypanosoma congolense TcIL3000_0_24600   dynein light chain, putative
Trypanosoma congolense TcIL3000.11.6050   dynein light chain, putative
Trypanosoma cruzi TcCLB.506203.20   dynein light chain, putative
Trypanosoma cruzi TcCLB.508645.30   dynein light chain, putative
Toxoplasma gondii TGME49_285350   dynein light chain, putative
Trichomonas vaginalis TVAG_447870   dynein light chain, putative

Essentiality

Smp_160330 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb11.02.3390 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (3 days) alsford
Tb11.02.3390 Trypanosoma brucei significant loss of fitness in bloodstream forms (6 days) alsford
Tb11.02.3390 Trypanosoma brucei no significant loss or gain of fitness in procyclic forms alsford
Tb11.02.3390 Trypanosoma brucei no significant loss or gain of fitness in differentiation of procyclic to bloodstream forms alsford
PBANKA_0708100 Plasmodium berghei Dispensable plasmo
TGME49_285350 Toxoplasma gondii Probably non-essential sidik
Show/Hide essentiality data references
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier Smp_160330 (Schistosoma mansoni), dynein light chain
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