pI: 5.9555 |
Length (AA): 480 |
MW (Da): 54390 |
Paralog Number:
0
Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Modbase 3D models:
There are 6 models calculated for this protein. More info on
these models, including the
models themselves is available at:
Modbase
Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
---|---|---|---|---|---|---|---|---|---|
7 | 172 | 2hq6 (A) | 7 | 172 | 69.00 | 0 | 1 | 1.29583 | -1.73 |
10 | 339 | 1ihg (A) | 13 | 365 | 26.00 | 0 | 1 | 0.9 | 0.06 |
14 | 133 | 1a58 (A) | 8 | 143 | 46.00 | 0 | 1 | 0.728 | -0.81 |
251 | 414 | 5cwp (A) | 6 | 168 | 16.00 | 0 | 0 | 0.553967 | -1.41 |
261 | 423 | 3v6i (A) | 2 | 159 | 20.00 | 0 | 0.72 | 0.512983 | -0.42 |
281 | 335 | 5cwm (A) | 2 | 57 | 44.00 | 0.73 | 0.86 | 0.853583 | -2.76 |
Help me make sense of these data.
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
Ortholog group members (OG5_129157)
Species | Accession | Gene Product |
---|---|---|
Arabidopsis thaliana | AT4G33060 | cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein |
Babesia bovis | BBOV_II006340 | peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein |
Brugia malayi | Bm1_29125 | cyclophilin-type peptidyl-prolyl cis-trans isomerase-16, Bmcyp-16 |
Caenorhabditis elegans | CELE_Y17G7B.9 | Protein CYN-16 |
Dictyostelium discoideum | DDB_G0268358 | cyclophilin-type peptidylprolyl cis-trans isomerase |
Drosophila melanogaster | Dmel_CG10907 | CG10907 gene product from transcript CG10907-RA |
Echinococcus granulosus | EgrG_000684950 | peptidyl prolyl cis trans isomerase CWC27 |
Echinococcus multilocularis | EmuJ_000684950 | peptidyl prolyl cis trans isomerase CWC27 |
Homo sapiens | ENSG00000153015 | CWC27 spliceosome-associated protein homolog (S. cerevisiae) |
Loa Loa (eye worm) | LOAG_11869 | hypothetical protein |
Loa Loa (eye worm) | LOAG_09606 | cyclophilin-type peptidyl-prolyl cis-trans isomerase-16 |
Mus musculus | ENSMUSG00000021715 | CWC27 spliceosome-associated protein homolog (S. cerevisiae) |
Neospora caninum | NCLIV_017250 | Peptidylprolyl isomerase (Cyclophilin)-like 2, related |
Oryza sativa | 4324199 | Os01g0582400 |
Plasmodium berghei | PBANKA_1020200 | peptidyl-prolyl cis-trans isomerase, putative |
Plasmodium falciparum | PF3D7_1423200 | peptidyl-prolyl cis-trans isomerase |
Plasmodium knowlesi | PKNH_1334800 | peptidyl-prolyl cis-trans isomerase, putative |
Plasmodium vivax | PVX_085320 | cyclophilin, putative |
Plasmodium yoelii | PY00017 | peptidyl-prolyl cis-trans isomerase, cyclophilin-type, putative |
Saccharomyces cerevisiae | YPL064C | putative peptidylprolyl isomerase CWC27 |
Schistosoma japonicum | Sjp_0084620 | ko:K01802 peptidylprolyl isomerase [EC5.2.1.8], putative |
Schistosoma mansoni | Smp_084080 | peptidyl-prolyl cis-trans isomerase (cyclophilin) |
Schmidtea mediterranea | mk4.014986.00 | Peptidyl-prolyl cis-trans isomerase CWC27 homolog |
Schmidtea mediterranea | mk4.004419.06 | Peptidyl-prolyl cis-trans isomerase CWC27 homolog |
Toxoplasma gondii | TGME49_241830 | peptidyl-prolyl cis-trans isomerase |
Theileria parva | TP02_0598 | cyclophilin, putative |
Gene/Ortholog | Organism | Phenotype | Source Study |
---|---|---|---|
PBANKA_1020200 | Plasmodium berghei | Dispensable | plasmo |
TGME49_241830 | Toxoplasma gondii | Essentiality uncertain | sidik |
blattner | Systematic mutagenesis of the E. coli (MG1655) genome | J Bacteriol 2004, 186:4921-4930 |
wormbase | C. elegans RNAi experiments | WormBase web site, http://www.wormbase.org, release WS170 |
neb | C. elegans RNAi phenotypes | Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs |
keio | Systematic single-gene knock-out mutants of E. coli K12 | The Keio Collection |
alsford | High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome | Genome Res 2011, 21:915-924 |
gerdes | Experimental determination and system-level analysis of essential genes in E. coli MG1655 | Gerdes et al., J Bacteriol. 2003 185:5673-84 |
nmpdr | Genome-scale essentiality datasets from published studies (M. tuberculosis) | National Microbial Pathogen Data Resource |
shigen | Profiling of E. coli Chromosome (PEC) | National Institute of Genetics, Japan |
yeastgenome | Systematic deletion of yeast genes | Saccharomyces Genome Database |
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.