Detailed view for PF3D7_0317800

Basic information

TDR Targets ID: 3675
Plasmodium falciparum, 26S proteasome non-ATPase regulatory subunit 9, putative
Source Database / ID:  PlasmoDB   |   GeneDB   |   MPMP

pI: 6.8342 | Length (AA): 225 | MW (Da): 26466 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

No Pfam domain information for this protein.

Gene Ontology

Mouse over links to read term descriptions.
GO:0070682   GO:proteasome regulatory particle assembly  

GO:0005838   proteasome regulatory particle  
GO:0005515   protein binding  
GO:0006511   ubiquitin-dependent protein catabolic process  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 3 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
125 182 1wi2 (A) 42 99 17.00 0.000067 0.04 0.44 -0.28
5 70 3whj (A) 30 92 33.00 0.074 0.45 0.612433 -1.01
110 222 4o06 (A) 115 220 26.00 0.0000019 0.78 0.675422 0.37

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Upper 80-100% percentile intra-erythrocytic - 0 hs, intra-erythrocytic - 8 hs, intra-erythrocytic - 16 hs, intra-erythrocytic - 24 hs, intra-erythrocytic - 32 hs, sporozoite, early ring, early trophozoite, late trophozoite. Otto TD PlasmoDB
Upregulation Percent Ranking Stage Dataset
Upper 60-80% percentile intra-erythrocytic - 48 hs, early schizont, late ring, late schizont, Oocyst, Ring, Sporozoite. Otto TD PlasmoDB Zanghi G
Upregulation Percent Ranking Stage Dataset
Mid 40-60% percentile intra-erythrocytic - 40 hs, Male Gametocyte. Otto TD Lasonder E
Upregulation Percent Ranking Stage Dataset
Lower 0-20% percentile Female Gametocyte. Lasonder E
Show/Hide expression data references
  • Zanghi G A Specific PfEMP1 Is Expressed in P. falciparum Sporozoites and Plays a Role in Hepatocyte Infection.
  • Otto TD New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq.
  • Lasonder E Integrated transcriptomic and proteomic analyses of P. falciparum gametocytes. Molecular insight into sex-specific processes and translational repression.
  • PlasmoDB Data on upregulation of P. falciparum genes in different life cycle stages, combined from several microarray experiments available in PlasmoDB

Orthologs

Ortholog group members (OG5_128010)

Species Accession Gene Product
Arabidopsis thaliana AT5G57950   26S proteasome non-ATPase regulatory subunit 9
Babesia bovis BBOV_II004550   conserved hypothetical protein
Brugia malayi Bm1_11015   Probable 26S proteasome non-ATPase regulatory subunit 9
Brugia malayi Bm1_10245   Probable 26S proteasome non-ATPase regulatory subunit 9
Brugia malayi Bm1_23495   Probable 26S proteasome non-ATPase regulatory subunit 9
Candida albicans CaO19.9837   similar to human proteosomal modulator subunit p27
Candida albicans CaO19.1014   similar to human proteosomal modulator subunit p27
Candida albicans CaO19.2301   similar to human proteosomal modulator subunit p27
Cryptosporidium hominis Chro.50142   proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
Cryptosporidium parvum cgd5_2360   p27 like 26S proteasomal subunit with a PDZ domain
Dictyostelium discoideum DDB_G0275753   26S proteasome non-ATPase regulatory subunit 9
Drosophila melanogaster Dmel_CG9588   CG9588 gene product from transcript CG9588-RA
Echinococcus granulosus EgrG_000982600   26S proteasome non ATPase regulatory subunit
Entamoeba histolytica EHI_074770   proteasome regulatory subunit, putative
Echinococcus multilocularis EmuJ_000982600   26S proteasome non ATPase regulatory subunit
Giardia lamblia GL50803_6647   Hypothetical protein
Homo sapiens ENSG00000110801   proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
Leishmania braziliensis LbrM.16.0290   proteasome 26S non-ATPase subunit 9, putative
Leishmania donovani LdBPK_160300.1   proteasome 26S non-ATPase subunit 9, putative
Leishmania infantum LinJ.16.0300   proteasome 26S non-ATPase subunit 9, putative
Leishmania major LmjF.16.0290   proteasome 26S non-ATPase subunit 9, putative
Leishmania mexicana LmxM.16.0290   proteasome 26S non-ATPase subunit 9, putative
Loa Loa (eye worm) LOAG_04601   hypothetical protein
Mus musculus ENSMUSG00000029440   proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
Neospora caninum NCLIV_047130   hypothetical protein
Oryza sativa 4347083   Os09g0420600
Plasmodium berghei PBANKA_0807400   26S proteasome non-ATPase regulatory subunit 9, putative
Plasmodium falciparum PF3D7_0317800   26S proteasome non-ATPase regulatory subunit 9, putative
Plasmodium knowlesi PKNH_0824000   26S proteasome non-ATPase regulatory subunit 9, putative
Plasmodium vivax PVX_095340   26S proteasome regulatory subunit p27, putative
Plasmodium yoelii PY02649   PDZ domain, putative
Saccharomyces cerevisiae YIL007C   Nas2p
Schistosoma japonicum Sjp_0311100   ko:K06693 26S proteasome non-ATPase regulatory subunit 9, putative
Schistosoma japonicum Sjp_0301990   expressed protein
Schistosoma mansoni Smp_181380   26S proteasome non-ATPase regulatory subunit
Schmidtea mediterranea mk4.000039.02   Probable 26S proteasome non-ATPase regulatory subunit 9
Trypanosoma brucei gambiense Tbg972.8.5740   proteasome 26S non-ATPase subunit 9, putative
Trypanosoma brucei Tb927.8.5740   proteasome 26S non-ATPase subunit 9, putative
Trypanosoma congolense TcIL3000_8_5530   proteasome 26S non-ATPase subunit 9, putative
Trypanosoma cruzi TcCLB.503473.4   proteasome 26S non-ATPase subunit 9, putative
Trypanosoma cruzi TcCLB.503851.54   proteasome 26S non-ATPase subunit 9, putative
Trypanosoma cruzi TcCLB.506743.150   proteasome 26S non-ATPase subunit 9, putative
Toxoplasma gondii TGME49_225580   proteasome (prosome, macropain) 26S subunit, non-ATPase, 9, putative
Theileria parva TP02_0299   hypothetical protein, conserved
Trichomonas vaginalis TVAG_468020   26S proteasome non-ATPase regulatory subunit, putative

Essentiality

PF3D7_0317800 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb927.8.5740 Trypanosoma brucei significant loss of fitness in bloodstream forms (3 days) alsford
Tb927.8.5740 Trypanosoma brucei significant loss of fitness in bloodstream forms (6 days) alsford
Tb927.8.5740 Trypanosoma brucei significant loss of fitness in procyclic forms alsford
Tb927.8.5740 Trypanosoma brucei significant loss of fitness in differentiation of procyclic to bloodstream forms alsford
TGME49_225580 Toxoplasma gondii Probably essential sidik
Show/Hide essentiality data references
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

15 literature references were collected for this gene.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier PF3D7_0317800 (Plasmodium falciparum), 26S proteasome non-ATPase regulatory subunit 9, putative
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