Detailed view for PY04720

Basic information

TDR Targets ID: 531373
Plasmodium yoelii, putative metal ion transporter
Source Database / ID: 

pI: 8.0169 | Length (AA): 771 | MW (Da): 88952 | Paralog Number: 0

Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 14

Druggability Group : DG

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF01566   Natural resistance-associated macrophage protein

Gene Ontology

Mouse over links to read term descriptions.
GO:0016020   membrane  
GO:0046873   metal ion transmembrane transporter activity  
GO:0030001   metal ion transport  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 4 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
23 196 4uvj (A) 821 1020 14.00 0 0.01 0.226481 -0.87
25 138 5i4a (A) 21 129 33.00 0.38 0.28 0.33236 0.24
235 683 5m87 (A) 30 494 22.00 0 1 0.725161 -0.1
243 648 5kte (A) 43 426 27.00 0 0.65 0.556089 0.76

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_127097)

Species Accession Gene Product
Arabidopsis thaliana AT1G15960   metal transporter Nramp6
Arabidopsis thaliana AT1G47240   metal transporter NRAMP2
Arabidopsis thaliana AT1G80830   metal transporter Nramp1
Arabidopsis thaliana AT4G18790   metal transporter Nramp5
Arabidopsis thaliana AT5G67330   metal transporter Nramp4
Arabidopsis thaliana AT2G23150   metal transporter Nramp3
Brugia malayi Bm1_40010   NRAMP-like transporter K11G12.4
Candida albicans CaO19.2069   probable NRAMP divalent cation transporter similar to S. cerevisiae SMF3 (YLR034C) vacuolar metal transporter
Candida albicans CaO19.12159   one of two probable NRAMP divalent cation transporter genes similar to S. cerevisiae SMF1 (YOL122C) cell surface manganese trans
Candida albicans CaO19.9616   probable NRAMP divalent cation transporter similar to S. cerevisiae SMF3 (YLR034C) vacuolar metal transporter
Candida albicans CaO19.2270   one of two probable NRAMP divalent cation transporter genes similar to S. cerevisiae SMF1 (YOL122C) cell surface manganese trans
Candida albicans CaO19.9810   one of two probable NRAMP divalent cation transporter genes similar to S. cerevisiae SMF1 (YOL122C) cell surface manganese trans
Candida albicans CaO19.4690   one of two probable NRAMP divalent cation transporter genes similar to S. cerevisiae SMF1 (YOL122C) cell surface manganese trans
Caenorhabditis elegans CELE_K11G12.3   Protein SMF-2
Caenorhabditis elegans CELE_K11G12.4   Protein SMF-1, isoform B
Caenorhabditis elegans CELE_Y69A2AR.4   Protein SMF-3
Dictyostelium discoideum DDB_G0276973   natural resistance-associated macrophage protein
Dictyostelium discoideum DDB_G0275815   natural resistance-associated macrophage protein
Drosophila melanogaster Dmel_CG3671   Malvolio
Escherichia coli b2392   manganese/divalent cation transporter
Echinococcus granulosus EgrG_000945600   divalent metal transporter DMT1B
Echinococcus multilocularis EmuJ_000945600   divalent metal transporter DMT1B
Homo sapiens ENSG00000110911   solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2
Homo sapiens ENSG00000018280   solute carrier family 11 (proton-coupled divalent metal ion transporter), member 1
Loa Loa (eye worm) LOAG_13171   hypothetical protein
Loa Loa (eye worm) LOAG_05166   hypothetical protein
Mycobacterium leprae ML2098   DIVALENT CATION-TRANSPORT INTEGRAL MEMBRANE PROTEIN MNTH (BRAMP) (MRAMP)
Mus musculus ENSMUSG00000026177   solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1
Mus musculus ENSMUSG00000023030   solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
Mycobacterium tuberculosis Rv0924c   Divalent cation-transport integral membrane protein MntH (BRAMP) (MRAMP)
Mycobacterium ulcerans MUL_4445   manganese transport protein MntH
Neospora caninum NCLIV_038890   hypothetical protein
Oryza sativa 9272162   Os01g0733001
Oryza sativa 4342859   Os07g0257200
Oryza sativa 4342862   Os07g0258400
Oryza sativa 4328200   Os02g0131800
Oryza sativa 4352640   Os12g0581600
Oryza sativa 4332012   Os03g0208500
Onchocerca volvulus OVOC5136   Protein Malvolio homolog
Plasmodium berghei PBANKA_1238600   transporter, putative
Plasmodium falciparum PF3D7_0523800   transporter, putative
Plasmodium knowlesi PKNH_1009100   transporter, putative
Plasmodium vivax PVX_080060   metal transporter, putative
Plasmodium yoelii PY04720   putative metal ion transporter
Saccharomyces cerevisiae YOL122C   divalent metal ion transporter SMF1
Saccharomyces cerevisiae YLR034C   putative divalent metal ion transporter SMF3
Schistosoma japonicum Sjp_0301090   ko:K03322 metal ion transporter, Nramp family, putative
Schistosoma mansoni Smp_099850.3   divalent metal transporter DMT1B
Schistosoma mansoni Smp_099850.4   divalent metal transporter DMT1B
Schmidtea mediterranea mk4.022723.00   Protein Malvolio
Schmidtea mediterranea mk4.037519.00  
Schmidtea mediterranea mk4.009244.00   Protein Malvolio
Schmidtea mediterranea mk4.004761.00  
Toxoplasma gondii TGME49_267270   divalent metal transporter, putative

Essentiality

PY04720 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
b2392 Escherichia coli non-essential goodall
TGME49_267270 Toxoplasma gondii Probably non-essential sidik
Show/Hide essentiality data references
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Homo sapiens solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 Compounds References
Homo sapiens solute carrier family 11 (proton-coupled divalent metal ion transporter), member 1 Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

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Gene identifier PY04720 (Plasmodium yoelii), putative metal ion transporter
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