Detailed view for TVAG_047300

Basic information

TDR Targets ID: 885536
Trichomonas vaginalis, protein phosphatases pp1 regulatory subunit, putative
Source Database / ID: 

pI: 4.3028 | Length (AA): 374 | MW (Da): 42934 | Paralog Number: 6

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF14580   Leucine-rich repeat

Gene Ontology

Mouse over links to read term descriptions.
GO:0044458   GO:motile cilium assembly  

GO:0005515   protein binding  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

No model available for this protein in Modbase.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_128896)

Species Accession Gene Product
Drosophila melanogaster Dmel_CG31623   defective transmitter release
Echinococcus granulosus EgrG_000177200   leucine rich repeat containing protein 50
Echinococcus multilocularis EmuJ_000177200   leucine rich repeat containing protein 50
Giardia lamblia GL50803_11885   Phosphatase 1 regulatory subunit, putative
Homo sapiens ENSG00000154099   dynein, axonemal, assembly factor 1
Leishmania braziliensis LbrM.35.5130   hypothetical protein, conserved
Leishmania braziliensis LbrM.32.0820   hypothetical protein, conserved
Leishmania donovani LdBPK_365110.1   hypothetical protein, conserved
Leishmania donovani LdBPK_320770.1   Outer row dynein-assembly protein 7
Leishmania infantum LinJ.36.5110   hypothetical protein, conserved
Leishmania infantum LinJ.32.0770   hypothetical protein, conserved
Leishmania major LmjF.32.0730   hypothetical protein, conserved
Leishmania major LmjF.36.4890   hypothetical protein, conserved
Leishmania mexicana LmxM.36.4890   hypothetical protein, conserved
Leishmania mexicana LmxM.31.0730   hypothetical protein, conserved
Mus musculus ENSMUSG00000031831   dynein, axonemal assembly factor 1
Neospora caninum NCLIV_065070   leucine rich repeat protein, putative
Neospora caninum NCLIV_033520   leucine rich repeat protein, putative
Plasmodium berghei PBANKA_1360600   leucine-rich repeat protein
Plasmodium falciparum PF3D7_1347800   leucine-rich repeat protein
Plasmodium knowlesi PKNH_1253100   leucine-rich repeat protein
Plasmodium vivax PVX_083285   leucine-rich repeat protein
Plasmodium yoelii PY06074   hypothetical protein
Schmidtea mediterranea mk4.004508.01   Dynein assembly factor 1, axonemal homolog
Trypanosoma brucei gambiense Tbg972.11.12370   hypothetical protein, conserved
Trypanosoma brucei gambiense Tbg972.11.15610   hypothetical protein, conserved
Trypanosoma brucei Tb927.11.11040   hypothetical protein, conserved
Trypanosoma brucei Tb927.11.13980   Outer row dynein-assembly protein 7
Trypanosoma congolense TcIL3000.11.14340   Outer row dynein-assembly protein 7
Trypanosoma congolense TcIL3000.11.11760   Leucine Rich repeats (2 copies), putative
Trypanosoma cruzi TcCLB.507841.30   hypothetical protein, conserved
Trypanosoma cruzi TcCLB.511727.310   Outer row dynein-assembly protein 7
Trypanosoma cruzi TcCLB.508269.70   hypothetical protein, conserved
Trichomonas vaginalis TVAG_047300   protein phosphatases pp1 regulatory subunit, putative
Trichomonas vaginalis TVAG_376770   protein phosphatases pp1 regulatory subunit, putative
Trichomonas vaginalis TVAG_484580   protein phosphatases pp1 regulatory subunit, putative
Trichomonas vaginalis TVAG_179810   protein phosphatases pp1 regulatory subunit, putative
Trichomonas vaginalis TVAG_216780   protein phosphatases pp1 regulatory subunit, putative
Trichomonas vaginalis TVAG_299230   protein phosphatases pp1 regulatory subunit, putative
Trichomonas vaginalis TVAG_035130   protein phosphatases pp1 regulatory subunit, putative

Essentiality

TVAG_047300 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb11.01.2830 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (3 days) alsford
Tb11.01.2830 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (6 days) alsford
Tb11.01.2830 Trypanosoma brucei significant gain of fitness in procyclic forms alsford
Tb11.01.2830 Trypanosoma brucei no significant loss or gain of fitness in differentiation of procyclic to bloodstream forms alsford
Tb11.01.5550 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (3 days) alsford
Tb11.01.5550 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (6 days) alsford
Tb11.01.5550 Trypanosoma brucei no significant loss or gain of fitness in procyclic forms alsford
Tb11.01.5550 Trypanosoma brucei no significant loss or gain of fitness in differentiation of procyclic to bloodstream forms alsford
Show/Hide essentiality data references
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier TVAG_047300 (Trichomonas vaginalis), protein phosphatases pp1 regulatory subunit, putative
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