Detailed view for MUL_4442
Basic information
Mycobacterium ulcerans, short chain dehydrogenase
Source Database / ID: KEGG
pI: 5.2726 |
Length (AA): 263 |
MW (Da): 27067 |
Paralog Number:
0
Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Network
Pfam domains
Gene Ontology
Metabolic Pathways
Structural information
Modbase 3D models:
There are 4 models calculated for this protein. More info on
these models, including the
models themselves is available at:
Modbase
| Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
|---|---|---|---|---|---|---|---|---|---|
| 4 | 255 | 3pk0 (A) | 0 | 251 | 34.00 | 0 | 1 | 1.41797 | -0.65 |
| 4 | 250 | 1fmc (A) | 5 | 249 | 40.00 | 0 | 1 | 1.47426 | -0.61 |
| 7 | 263 | 5tf4 (A) | 7 | 267 | 25.00 | 0 | 1 | 1.22679 | -0.01 |
| 7 | 251 | 2ew8 (A) | 4 | 246 | 43.00 | 0 | 1 | 1.35066 | -0.15 |
Help me make sense of these data.
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
Expression
Orthologs
Ortholog group members (OG5_130175)
| Species | Accession | Gene Product |
|---|---|---|
| Arabidopsis thaliana | AT3G12800 | short-chain dehydrogenase-reductase B |
| Candida albicans | CaO19.11168 | similar to peroxisomal 2,4-dienoyl-CoA reductase |
| Candida albicans | CaO19.4157 | SPS19-like orf, peroxisomal 2,4-dienoyl-CoA reductase |
| Candida albicans | CaO19.11633 | SPS19-like orf, peroxisomal 2,4-dienoyl-CoA reductase |
| Candida albicans | CaO19.3684 | truncated form of SPS19, peroxisomal 2, 4-dienoyl-CoA reductase |
| Caenorhabditis elegans | CELE_T05C12.3 | Protein DECR-1.3 |
| Caenorhabditis elegans | CELE_W01C9.4 | Protein DECR-1.2 |
| Homo sapiens | ENSG00000242612 | 2,4-dienoyl CoA reductase 2, peroxisomal |
| Mus musculus | ENSMUSG00000036775 | 2-4-dienoyl-Coenzyme A reductase 2, peroxisomal |
| Mycobacterium tuberculosis | Rv0927c | Probable short-chain type dehydrogenase/reductase |
| Mycobacterium ulcerans | MUL_4442 | short chain dehydrogenase |
| Neospora caninum | NCLIV_046640 | hypothetical protein |
| Oryza sativa | 4336980 | Os04g0614000 |
| Saccharomyces cerevisiae | YNL202W | Sps19p |
| Toxoplasma gondii | TGME49_226300 | 2,4-dienoyl CoA reductase 2, peroxisomal family protein |
Essentiality
| Gene/Ortholog | Organism | Phenotype | Source Study |
|---|---|---|---|
| TGME49_226300 | Toxoplasma gondii | Probably non-essential | sidik |
-
yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database -
wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170 -
shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan -
keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection -
neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs -
nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource -
alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924 -
gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84 -
blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
Phenotypes and Validation (curated)
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.
Annotated validation
Associated compounds / Druggability
Known modulators for this target
Predicted associations
By orthology with druggable targets
By sequence similarity to non orthologous druggable targets
| Species | Target | Length | Identity | Alignment span | Linked Drugs | Reference |
|---|---|---|---|---|---|---|
| Macaca mulatta | Hydroxysteroid 11-beta dehydrogenase 1 | 140 aa | 28.0% | 132 aa | Compounds | References |
| Staphylococcus aureus subsp. aureus MRSA252 | Enoyl-[acyl-carrier-protein] reductase | 256 aa | 27.1% | 262 aa | Compounds | References |
| Staphylococcus aureus | Enoyl-[acyl-carrier-protein] reductase [NADPH] | 256 aa | 27.1% | 262 aa | Compounds | References |
| Staphylococcus aureus | Enoyl-ACP reductase | 243 aa | 27.3% | 245 aa | Compounds | References |
| Bacillus subtilis (strain 168) | Enoyl-[acyl-carrier-protein] reductase [NADH] | 258 aa | 24.6% | 256 aa | Compounds | References |
| Staphylococcus aureus (strain NCTC 8325) | Enoyl-[acyl-carrier-protein] reductase [NADPH] FabI | 256 aa | 26.7% | 262 aa | Compounds | References |
Obtained from network model
Assayability
Assay information
Reagent availability
Bibliographic References