Detailed view for Rv2502c

Basic information

TDR Targets ID: 980964
Mycobacterium tuberculosis, Probable acetyl-/propionyl-CoA carboxylase (beta subunit) AccD1
Source Database / ID:  Tuberculist 

pI: 6.5025 | Length (AA): 529 | MW (Da): 56746 | Paralog Number: 0

Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 0

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

No Pfam domain information for this protein.

Gene Ontology

Mouse over links to read term descriptions.
No GO information for this protein.

Structural information

Modbase 3D models:

There is 1 model calculated for this protein. More info on this model, including the model itself is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
11 529 4q0g (A) 11 529 99.99 0 1 2.1709 -0.99

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_129211)

Species Accession Gene Product
Arabidopsis thaliana AT4G34030   methylcrotonoyl-CoA carboxylase beta chain
Caenorhabditis elegans CELE_F02A9.4   Protein F02A9.4, isoform A
Dictyostelium discoideum DDB_G0271960   3-methylcrotonyl-CoA:carbon dioxide ligase beta subunit
Drosophila melanogaster Dmel_CG3267   CG3267 gene product from transcript CG3267-RA
Homo sapiens ENSG00000131844   methylcrotonoyl-CoA carboxylase 2 (beta)
Leishmania braziliensis LbrM.11.0370   3-methylcrotonoyl-CoA carboxylase beta subunit, putative
Leishmania donovani LdBPK_110600.1   3-methylcrotonoyl-CoA carboxylase beta subunit, putative
Leishmania infantum LinJ.11.0600   3-methylcrotonoyl-CoA carboxylase beta subunit, putative
Leishmania major LmjF.11.0590   3-methylcrotonoyl-CoA carboxylase beta subunit, putative
Leishmania mexicana LmxM.11.0590   3-methylcrotonoyl-CoA carboxylase beta subunit, putative
Mus musculus ENSMUSG00000021646   methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
Mycobacterium tuberculosis Rv2502c   Probable acetyl-/propionyl-CoA carboxylase (beta subunit) AccD1
Neospora caninum NCLIV_036840   acyl-CoA carboxyltransferase beta chain, putative
Oryza sativa 4345605   Os08g0424200
Schmidtea mediterranea mk4.088796.01  
Schmidtea mediterranea mk4.041435.00   Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
Schmidtea mediterranea mk4.002162.05   Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
Trypanosoma brucei gambiense Tbg972.11.7500   3-methylcrotonoyl-CoA carboxylase beta subunit, putative
Trypanosoma brucei Tb927.11.6630   3-methylcrotonoyl-CoA carboxylase beta subunit, putative
Trypanosoma congolense TcIL3000_0_44270   3-methylcrotonoyl-CoA carboxylase beta subunit, putative
Trypanosoma cruzi TcCLB.508799.170   3-methylcrotonoyl-CoA carboxylase beta subunit, putative
Trypanosoma cruzi TcCLB.506773.40   3-methylcrotonoyl-CoA carboxylase beta subunit, putative
Toxoplasma gondii TGME49_269680   acyl-CoA carboxyltransferase beta chain, putative

Essentiality

Rv2502c has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb11.02.4480 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (3 days) alsford
Tb11.02.4480 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (6 days) alsford
Tb11.02.4480 Trypanosoma brucei no significant loss or gain of fitness in procyclic forms alsford
Tb11.02.4480 Trypanosoma brucei no significant loss or gain of fitness in differentiation of procyclic to bloodstream forms alsford
CELE_F02A9.4 Caenorhabditis elegans embryonic lethal wormbase
CELE_F02A9.4 Caenorhabditis elegans larval arrest wormbase
CELE_F02A9.4 Caenorhabditis elegans slow growth wormbase
TGME49_269680 Toxoplasma gondii Essentiality uncertain sidik
Show/Hide essentiality data references
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier Rv2502c (Mycobacterium tuberculosis), Probable acetyl-/propionyl-CoA carboxylase (beta subunit) AccD1
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