Detailed information for compound 21854

Basic information

Technical information
  • TDR Targets ID: 21854
  • Name: N-[(6-amino-2-methylpyridin-3-yl)methyl]-2-[6 -methyl-2-oxo-3-(phenethylamino)pyrazin-1-yl] acetamide
  • MW: 406.481 | Formula: C22H26N6O2
  • H donors: 3 H acceptors: 3 LogP: 1.44 Rotable bonds: 9
    Rule of 5 violations (Lipinski): 1
  • SMILES: O=C(Cn1c(C)cnc(c1=O)NCCc1ccccc1)NCc1ccc(nc1C)N
  • InChi: 1S/C22H26N6O2/c1-15-12-26-21(24-11-10-17-6-4-3-5-7-17)22(30)28(15)14-20(29)25-13-18-8-9-19(23)27-16(18)2/h3-9,12H,10-11,13-14H2,1-2H3,(H2,23,27)(H,24,26)(H,25,29)
  • InChiKey: PVDHYBJORRALSQ-UHFFFAOYSA-N  

Network

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Synonyms

  • N-[(6-amino-2-methyl-3-pyridyl)methyl]-2-[6-methyl-2-oxo-3-(phenethylamino)pyrazin-1-yl]acetamide
  • N-[(6-amino-2-methyl-3-pyridyl)methyl]-2-[6-methyl-2-oxo-3-(phenethylamino)-1-pyrazinyl]acetamide
  • N-[(6-azanyl-2-methyl-pyridin-3-yl)methyl]-2-[6-methyl-2-oxo-3-(phenethylamino)pyrazin-1-yl]ethanamide
  • N-[(6-amino-2-methyl-3-pyridyl)methyl]-2-[2-keto-6-methyl-3-(phenethylamino)pyrazin-1-yl]acetamide
  • N-[(6-amino-2-methylpyridin-3-yl)methyl]-2-[6-methyl-2-oxo-3-(2-phenylethylamino)pyrazin-1-yl]acetamide
  • N-[(6-amino-2-methyl-3-pyridyl)methyl]-2-[6-methyl-2-oxo-3-(2-phenylethylamino)pyrazin-1-yl]acetamide
  • N-[(6-amino-2-methyl-3-pyridyl)methyl]-2-[6-methyl-2-oxo-3-(2-phenylethylamino)-1-pyrazinyl]acetamide
  • N-[(6-amino-2-methyl-3-pyridyl)methyl]-2-[2-keto-6-methyl-3-(2-phenylethylamino)pyrazin-1-yl]acetamide
  • N-[(6-amino-2-methyl-pyridin-3-yl)methyl]-2-[6-methyl-2-oxo-3-(2-phenylethylamino)pyrazin-1-yl]ethanamide
  • 3-(2-Phenethylamino)-6-methyl-1-(2-amino-6-methyl-5-methylene-carboxamidomethyl-pyridinyl)pyrazinone

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Homo sapiens coagulation factor II (thrombin) Starlite/ChEMBL References
Homo sapiens protease, serine, 3 Starlite/ChEMBL References
Homo sapiens protease, serine, 2 (trypsin 2) References
Homo sapiens protease, serine, 1 (trypsin 1) References

Predicted pathogen targets for this compound

By orthology
Species Potential target Known druggable target/s Ortholog Group
Onchocerca volvulus Get druggable targets OG5_126639 All targets in OG5_126639
Onchocerca volvulus Get druggable targets OG5_126639 All targets in OG5_126639
Schistosoma japonicum ko:K09639 transmembrane protease, serine 8, putative Get druggable targets OG5_126639 All targets in OG5_126639
Schistosoma japonicum ko:K09639 transmembrane protease, serine 8, putative Get druggable targets OG5_126639 All targets in OG5_126639
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) Get druggable targets OG5_126639 All targets in OG5_126639
Brugia malayi Trypsin family protein Get druggable targets OG5_126639 All targets in OG5_126639
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) Get druggable targets OG5_126639 All targets in OG5_126639
Loa Loa (eye worm) hypothetical protein Get druggable targets OG5_126639 All targets in OG5_126639
Loa Loa (eye worm) hypothetical protein Get druggable targets OG5_126639 All targets in OG5_126639

By sequence similarity to non orthologous known druggable targets
Species Potential target Known druggable target Length Alignment span Identity
Schistosoma mansoni cercarial elastase (S01 family) protease, serine, 2 (trypsin 2) 247 aa 240 aa 25.8 %
Schistosoma mansoni cercarial elastase (S01 family) protease, serine, 3 261 aa 234 aa 25.2 %
Brugia malayi Trypsin family protein protease, serine, 1 (trypsin 1) 247 aa 287 aa 21.6 %

Obtained from network model

Ranking Plot


Putative Targets List


Species Potential target Raw Global Species
Loa Loa (eye worm) hypothetical protein 0.0152 0.0135 0.4037
Mycobacterium ulcerans carbon monoxide dehydrogenase 0.0126 0.0108 0.0104
Echinococcus granulosus glycoprotein Antigen 5 0.0025 0.0004 0.0059
Onchocerca volvulus 0.0177 0.0161 0.4823
Schistosoma mansoni cercarial elastase (S01 family) 0.0025 0.0004 0.0059
Loa Loa (eye worm) trypsin family protein 0.0025 0.0004 0.0122
Leishmania major hypothetical protein, conserved 0.0021 0 0.5
Treponema pallidum quinoline 2-oxidoreductase 0.003 0.0009 0.8682
Schistosoma mansoni cercarial elastase (S01 family) 0.0025 0.0004 0.0059
Schistosoma mansoni aminopeptidase PILS (M01 family) 0.0025 0.0004 0.0059
Plasmodium vivax cysteine repeat modular protein 1, putative 0.0021 0 0.5
Brugia malayi Trypsin family protein 0.0344 0.0334 1
Brugia malayi Chymotrypsin-like protease CTRL-1 precursor 0.0025 0.0004 0.0122
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) 0.0025 0.0004 0.0059
Onchocerca volvulus 0.0025 0.0004 0.0122
Schistosoma mansoni hypothetical protein 0.0025 0.0004 0.0059
Toxoplasma gondii transporter, solute:sodium symporter (SSS) family protein 0.0177 0.0161 1
Echinococcus granulosus high affinity choline transporter 1 0.0177 0.0161 0.2316
Echinococcus multilocularis enteropeptidase 0.0025 0.0004 0.0059
Mycobacterium ulcerans aerobic-type carbon monoxide dehydrogenase subunit CoxM_2 0.0064 0.0044 0.004
Loa Loa (eye worm) hypothetical protein 0.0344 0.0334 1
Echinococcus multilocularis solute carrier family 5 0.0694 0.0697 1
Echinococcus multilocularis subfamily S1A unassigned peptidase (S01 family) 0.0025 0.0004 0.0059
Mycobacterium ulcerans carbon monoxyde dehydrogenase small chain CoxS 0.0036 0.0015 0.0011
Echinococcus granulosus Peptidase S1 S6 chymotrypsin Hap 0.0025 0.0004 0.0059
Schistosoma mansoni hypothetical protein 0.0025 0.0004 0.0059
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) 0.0344 0.0334 0.4802
Trichomonas vaginalis xanthine dehydrogenase, putative 0.019 0.0174 0.5
Echinococcus granulosus subfamily S1A unassigned peptidase S01 family 0.0025 0.0004 0.0059
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) 0.0025 0.0004 0.0059
Mycobacterium ulcerans carbon monoxyde dehydrogenase small chain CoxS 0.0036 0.0015 0.0011
Schistosoma mansoni cercarial elastase (S01 family) 0.0025 0.0004 0.0059
Mycobacterium tuberculosis Probable carbon monoxyde dehydrogenase (large chain) 0.009 0.0071 0.0055
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) 0.0025 0.0004 0.0059
Trichomonas vaginalis xanthine dehydrogenase, putative 0.019 0.0174 0.5
Echinococcus granulosus enteropeptidase 0.0025 0.0004 0.0059
Plasmodium falciparum cysteine repeat modular protein 1 0.0021 0 0.5
Mycobacterium tuberculosis Probable carbon monoxyde dehydrogenase (medium chain) 0.0064 0.0044 0.0029
Schistosoma mansoni cercarial elastase (S01 family) 0.0025 0.0004 0.0059
Schistosoma mansoni inositol transporter 0.0694 0.0697 1
Echinococcus multilocularis high affinity choline transporter 1 0.0177 0.0161 0.2316
Schistosoma mansoni cercarial elastase (S01 family) 0.0025 0.0004 0.0059
Echinococcus granulosus sodium:myo inositol cotransporter 0.0694 0.0697 1
Brugia malayi Trypsin-like protease protein 5 0.0025 0.0004 0.0122
Schistosoma mansoni cercarial elastase (S01 family) 0.0025 0.0004 0.0059
Loa Loa (eye worm) hypothetical protein 0.0025 0.0004 0.0122
Schistosoma mansoni cercarial elastase (S01 family) 0.0025 0.0004 0.0059
Echinococcus granulosus solute carrier family 5 0.0694 0.0697 1
Schistosoma mansoni cercarial elastase (S01 family) 0.0025 0.0004 0.0059
Echinococcus multilocularis sodium coupled monocarboxylate transporter 1 0.0177 0.0161 0.2316
Echinococcus granulosus sodium coupled monocarboxylate transporter 1 0.0177 0.0161 0.2316
Echinococcus multilocularis Peptidase S1 S6, chymotrypsin Hap 0.0025 0.0004 0.0059
Mycobacterium ulcerans histidinol dehydrogenase 0.9681 1 1
Echinococcus multilocularis transmembrane protease serine 3 0.0025 0.0004 0.0059
Mycobacterium ulcerans carbon monoxyde dehydrogenase medium chain CoxM 0.0064 0.0044 0.004
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) 0.0344 0.0334 0.4802
Onchocerca volvulus 0.0025 0.0004 0.0122
Onchocerca volvulus 0.0025 0.0004 0.0122
Loa Loa (eye worm) hypothetical protein 0.0025 0.0004 0.0122
Brugia malayi Trypsin family protein 0.0025 0.0004 0.0122
Brugia malayi GH02984p 0.0177 0.0161 0.4823
Treponema pallidum hypothetical protein 0.0031 0.001 1
Loa Loa (eye worm) hypothetical protein 0.0344 0.0334 1
Schistosoma mansoni sodium/solute symporter 0.0177 0.0161 0.2316
Schistosoma mansoni cercarial elastase (S01 family) 0.0025 0.0004 0.0059
Trichomonas vaginalis aldehyde oxidase, putative 0.019 0.0174 0.5
Loa Loa (eye worm) hypothetical protein 0.0177 0.0161 0.4823
Onchocerca volvulus 0.0025 0.0004 0.0122
Echinococcus granulosus Mastin 0.0025 0.0004 0.0059
Brugia malayi Trypsin family protein 0.0025 0.0004 0.0122
Schistosoma mansoni cercarial elastase (S01 family) 0.0025 0.0004 0.0059
Onchocerca volvulus 0.0025 0.0004 0.0122
Schistosoma mansoni cercarial elastase (S01 family) 0.0025 0.0004 0.0059
Mycobacterium ulcerans hypothetical protein 0.0031 0.001 0.0006
Mycobacterium ulcerans aerobic-type carbon monoxide dehydrogenase subunit CoxL_2 0.009 0.0071 0.0067
Echinococcus granulosus sodium:glucose cotransporter 0.0694 0.0697 1
Loa Loa (eye worm) hypothetical protein 0.0025 0.0004 0.0122
Brugia malayi hypothetical protein 0.0025 0.0004 0.0122
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) 0.0025 0.0004 0.0059
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) 0.0025 0.0004 0.0059
Echinococcus multilocularis sodium:myo inositol cotransporter 0.0694 0.0697 1
Onchocerca volvulus 0.0319 0.0308 0.9219
Echinococcus granulosus sodium:glucose cotransporter 2 0.0694 0.0697 1
Schistosoma mansoni inositol transporter 0.0694 0.0697 1
Echinococcus granulosus transmembrane protease serine 3 0.0025 0.0004 0.0059
Loa Loa (eye worm) hypothetical protein 0.0177 0.0161 0.4823
Brugia malayi Sodium:solute symporter family protein 0.0177 0.0161 0.4823
Loa Loa (eye worm) hypothetical protein 0.0025 0.0004 0.0122
Mycobacterium tuberculosis Probable histidinol dehydrogenase HisD (HDH) 0.9681 1 1
Mycobacterium ulcerans carbon monoxyde dehydrogenase large chain CoxL 0.0056 0.0036 0.0032
Echinococcus multilocularis Mastin 0.0025 0.0004 0.0059
Echinococcus multilocularis glycoprotein Antigen 5 0.0025 0.0004 0.0059
Brugia malayi hypothetical protein 0.0152 0.0135 0.4037
Trypanosoma cruzi hypothetical protein, conserved 0.0021 0 0.5
Onchocerca volvulus 0.0344 0.0334 1
Onchocerca volvulus 0.0152 0.0135 0.4037
Mycobacterium ulcerans carbon monoxyde dehydrogenase large chain CoxL 0.009 0.0071 0.0067
Brugia malayi Trypsin family protein 0.0025 0.0004 0.0122
Echinococcus multilocularis sodium:glucose cotransporter 2 0.0694 0.0697 1
Schistosoma mansoni high-affinity choline transporter 0.0177 0.0161 0.2316
Loa Loa (eye worm) hypothetical protein 0.0025 0.0004 0.0122

Activities

Activity type Activity value Assay description Source Reference
2x APTT (functional) = 380 nM in vitro anticoagulant potency (2x APTT) against rat plasma. ChEMBL. 9804686
2x APTT (functional) = 410 nM in vitro anticoagulant potency (2x APTT) against Human plasma. ChEMBL. 9804686
2x APTT (functional) = 410 nM in vitro anticoagulant potency (2x APTT) against Human plasma. ChEMBL. 9804686
2x aPTT (functional) = 0.41 uM Concentration required to double the activated partial thromboplastin time (2x APTT) in human plasma ChEMBL. 12570369
2x APTT (functional) = 0.41 uM Concentration needed to double the activated partial thromboplastin time in human plasma ChEMBL. 14505652
2x APTT (functional) = 0.41 uM Concentration needed to double the activated partial thromboplastin time in human plasma ChEMBL. 14505652
AUC (ADMET) = 275 ug min ml-1 In vivo area under curve was calculated by peroral administration at 1 mg/kg in fasted dog ChEMBL. 11934589
AUC (ADMET) = 23.1 uM h Area under curve was determined in dog after oral administration at 1 mg/kg ChEMBL. 12617893
AUC (ADMET) = 11.2 uM hr Area under curve(AUC) value of the compoundin dogs at 0.5 mg/kg dose upon oral administration ChEMBL. 9804686
Cmax (ADMET) = 0.9 ug ml-1 In vivo maximal concentration was calculated at 1 mg/kg in dog ChEMBL. 11934589
Cmax (ADMET) = 1.96 uM Maximum plasma concentration of the compound in dogs at 0.5 mg/kg dose upon oral administration ChEMBL. 9804686
Cmax (ADMET) = 5.37 uM Cmax of the compound was determined in dog after oral administration at 1 mg/kg ChEMBL. 12617893
Concentration (functional) = 0.41 uM In vitro concentration of the compound required to double the human activated partial thromboplastin time (2x APTT) ChEMBL. 12617893
Concentration (functional) = 0.41 uM Concentration required to double the human activated partial thromboplastin time in human plasma ChEMBL. 12482415
Concentration (functional) = 0.41 uM Concentration required to double the human activated partial thromboplastin time in human plasma ChEMBL. 12482415
F (ADMET) = 42 % Oral bioavailability of compound in rat ChEMBL. 15163182
F (ADMET) = 60 % Oral bioavailability of compound in rhesus macaques ChEMBL. 15163182
F (ADMET) = 91 % Oral bioavailability in dog ChEMBL. 15163182
Final plasma concentration (ADMET) = 238 nM Final plasma concentration after intravenous infusion at 5 microgram/Kg/min dose ChEMBL. 9804686
Final plasma concentration (ADMET) = 445 nM Final plasma concentration after intravenous infusion ChEMBL. 9804686
IC50 (binding) = 0.8 nM Inhibition of thrombin (unknown origin) LITERATURE. No reference
IC50 (binding) = 1800 nM Inhibition of trypsin (unknown origin) ChEMBL. No reference
Ki (binding) = nM In vitro inhibitory constant against factor Xa (FXa). ChEMBL. 11934589
Ki (binding) nM In vitro inhibitory constant against trypsin; Inactive ChEMBL. 11934589
Ki (binding) = 0 nM In vitro inhibitory constant against factor Xa (FXa). ChEMBL. 11934589
Ki (binding) 0 nM In vitro inhibitory constant against trypsin; Inactive ChEMBL. 11934589
Ki (binding) = 0.8 nM Inhibitory activity of the compound against thrombin (IIa) was determined ChEMBL. 9804686
Ki (binding) = 0.8 nM Inhibition of Thrombin ChEMBL. 12617893
Ki (binding) = 0.8 nM Inhibition of thrombin in human plasma ChEMBL. 12482415
Ki (binding) = 0.8 nM Inhibitory constant against thrombin (IIa) ChEMBL. 12570369
Ki (binding) = 0.8 nM Inhibitory potency against human thrombin ChEMBL. 15163182
Ki (binding) = 0.8 nM Inhibitory constant evaluated against thrombin (Factor IIa) ChEMBL. 14505652
Ki (binding) = 0.8 nM Inhibitory activity of the compound against thrombin (IIa) was determined ChEMBL. 9804686
Ki (binding) = 0.8 nM Inhibition of Thrombin ChEMBL. 12617893
Ki (binding) = 0.8 nM Inhibition of thrombin in human plasma ChEMBL. 12482415
Ki (binding) = 0.8 nM Inhibitory constant against thrombin (IIa) ChEMBL. 12570369
Ki (binding) = 0.8 nM Inhibitory potency against human thrombin ChEMBL. 15163182
Ki (binding) = 0.8 nM Inhibitory constant evaluated against thrombin (Factor IIa) ChEMBL. 14505652
Ki (binding) = 0.8 nM Inhibition of Thrombin (unknown origin) ChEMBL. 26200936
Ki (binding) = 1 nM In vitro inhibitory constant against human thrombin (FIIa). ChEMBL. 11934589
Ki (binding) = 1 nM In vitro inhibitory constant against human thrombin (FIIa). ChEMBL. 11934589
Ki (binding) = 1800 nM Inhibitory activity of the compound against trypsin was determined ChEMBL. 9804686
Ki (binding) = 1800 nM Inhibition of Trypsin ChEMBL. 12617893
Ki (binding) = 1800 nM Inhibition of trypsin in human plasma ChEMBL. 12482415
Ki (binding) = 1800 nM Inhibitory constant against human trypsin ChEMBL. 12570369
Ki (binding) = 1800 nM Inhibitory constant evaluated against trypsin ChEMBL. 14505652
Ki (binding) = 1800 nM Inhibitory activity of the compound against trypsin was determined ChEMBL. 9804686
Ki (binding) = 1800 nM Inhibition of Trypsin ChEMBL. 12617893
Ki (binding) = 1800 nM Inhibition of trypsin in human plasma ChEMBL. 12482415
Ki (binding) = 1800 nM Inhibitory constant against human trypsin ChEMBL. 12570369
Ki (binding) = 1800 nM Inhibitory constant evaluated against trypsin ChEMBL. 14505652
Ki (binding) = 1 ug nM-1 In vitro inhibitory activity against human Thrombin (FIIa) cleavage of the chromogenic substrate ChEMBL. 12270176
Occlusions (functional) = 0 In vivo antithrombotic activity was measured after intravenous infusion (at 10 microgram/Kg/min) of the compound in rat FeCl3 arterial thrombosis model; 0/6 ChEMBL. 9804686
Occlusions (functional) = 4 In vivo antithrombotic activity was measured after intravenous infusion (at 5 microgram/Kg/min) of the compound in rat FeCl3 arterial thrombosis model; 4/6 ChEMBL. 9804686
Selectivity ratio (binding) = 1908 Ratio of inhibitory constant evaluated against trypsin to that of thrombin (Factor IIa) ChEMBL. 14505652
Selectivity ratio (binding) = 1908 Ratio of inhibitory constant evaluated against trypsin to that of thrombin (Factor IIa) ChEMBL. 14505652
T max (ADMET) = 52.5 min time required for maximum concentration of the compound in dogs at 0.5 mg/kg dose upon oral administration ChEMBL. 9804686
T1/2 (ADMET) = 3.18 hr Half-life of the compound was determined in dog after oral administration at 1 mg/kg ChEMBL. 12617893
T1/2 (ADMET) = 199 min In vivo half life period was calculated at 1 mg/kg in dog ChEMBL. 11934589
T1/2 (ADMET) = 231 min Half-life of the compound in dogs at 0.5 mg/kg dose upon oral administration ChEMBL. 9804686
Unbound (functional) = 6 % Protein binding affinity of the compound was tested in human plasma, expressed as percent unbound (free) ChEMBL. 12482415
Unbound (functional) = 6 % Protein binding affinity of the compound was tested in human plasma, expressed as percent unbound (free) ChEMBL. 12482415

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

9 literature references were collected for this gene.

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