Species | Target name | Source | Bibliographic reference |
---|---|---|---|
Homo sapiens | cytochrome P450, family 3, subfamily A, polypeptide 4 | No references |
Species | Potential target | Known druggable target | Length | Alignment span | Identity |
---|---|---|---|---|---|
Brugia malayi | cytochrome P450 | cytochrome P450, family 3, subfamily A, polypeptide 4 | 502 aa | 492 aa | 24.2 % |
Species | Potential target | Raw | Global | Species |
---|---|---|---|---|
Plasmodium vivax | hypothetical protein, conserved | 0.0013 | 0.8119 | 0.5 |
Schistosoma mansoni | brg-1 associated factor | 0.0013 | 0.8119 | 1 |
Echinococcus multilocularis | SWI:SNF matrix associated | 0.0013 | 0.8119 | 1 |
Trypanosoma cruzi | cytochrome P450, putative | 0.0015 | 1 | 1 |
Chlamydia trachomatis | SWIB complex protein | 0.0013 | 0.8119 | 0.5 |
Schistosoma mansoni | hypothetical protein | 0.0013 | 0.8119 | 1 |
Brugia malayi | SWIB/MDM2 domain containing protein | 0.0013 | 0.8119 | 0.8119 |
Echinococcus granulosus | Upstream activation factor subunit UAF30 | 0.0013 | 0.8119 | 1 |
Toxoplasma gondii | DNA topoisomerase domain-containing protein | 0.0013 | 0.8119 | 1 |
Loa Loa (eye worm) | cytochrome P450 family protein | 0.0015 | 1 | 1 |
Trypanosoma brucei | cytochrome P450, putative | 0.0015 | 1 | 1 |
Brugia malayi | Cytochrome P450 family protein | 0.0015 | 1 | 1 |
Trichomonas vaginalis | conserved hypothetical protein | 0.0013 | 0.8119 | 0.5 |
Plasmodium falciparum | SWIB/MDM2 domain-containing protein | 0.0013 | 0.8119 | 1 |
Echinococcus multilocularis | Upstream activation factor subunit UAF30 | 0.0013 | 0.8119 | 1 |
Loa Loa (eye worm) | hypothetical protein | 0.0011 | 0.5833 | 0.5833 |
Plasmodium falciparum | SWIB/MDM2 domain-containing protein | 0.0013 | 0.8119 | 1 |
Loa Loa (eye worm) | SWIB/MDM2 domain-containing protein | 0.0013 | 0.8119 | 0.8119 |
Loa Loa (eye worm) | CYP4Cod1 | 0.0015 | 1 | 1 |
Onchocerca volvulus | 0.0013 | 0.8119 | 1 | |
Trypanosoma cruzi | cytochrome P450, putative | 0.0015 | 1 | 1 |
Loa Loa (eye worm) | brahma associated protein | 0.0013 | 0.8119 | 0.8119 |
Leishmania major | cytochrome p450-like protein | 0.0015 | 1 | 1 |
Brugia malayi | brahma associated protein 60 kDa | 0.0013 | 0.8119 | 0.8119 |
Brugia malayi | brahma associated protein 60 kDa | 0.0013 | 0.8119 | 0.8119 |
Plasmodium vivax | SWIB/MDM2 domain-containing protein, putative | 0.0013 | 0.8119 | 0.5 |
Chlamydia trachomatis | DNA topoisomerase I | 0.0013 | 0.8119 | 0.5 |
Toxoplasma gondii | SWIB/MDM2 domain-containing protein | 0.0013 | 0.8119 | 1 |
Echinococcus granulosus | SWI:SNF matrix associated | 0.0013 | 0.8119 | 1 |
Mycobacterium ulcerans | cytochrome P450 185A4 Cyp185A4 | 0.0015 | 1 | 0.5 |
Echinococcus multilocularis | SWI:SNF matrix associated | 0.0013 | 0.8119 | 1 |
Schistosoma mansoni | hypothetical protein | 0.0013 | 0.8119 | 1 |
Schistosoma mansoni | hypothetical protein | 0.0013 | 0.8119 | 1 |
Loa Loa (eye worm) | cytochrome P450 family protein | 0.0015 | 1 | 1 |
Echinococcus multilocularis | SWI:SNF matrix associated | 0.0013 | 0.8119 | 1 |
Activity type | Activity value | Assay description | Source | Reference |
---|---|---|---|---|
IC50 (binding) | = 0.102 nM | BindingDB_Patents: Homogenous Time-Resolved Fluorescence Assay (HTRF). The standard assay conditions for the in vitro HTRF assay consisted of a 50 ul total reaction volume in black 384-well Costar polypropylene plates in 1PBS buffer pH 7.4, 1 mM DTT, 0.1% BSA, 2.5 nM GST-hMDM2 (aa 1-188), 5 nM biotinylated-p53 (aa 1-83), 1.8 nM SA-XLent (Cisbio; Bedford, Mass.), 0.6 nM anti-GST cryptate monoclonal antibody (Cisbio; Bedford, Mass.) and 200 mM KF. Amino acid residues 1-188 of human MDM2 were expressed as an amino-terminal glutathione S-transferase (GST) fusion protein (GST-hMDM2) in Escherichia coli. Residues 1-83 of human p53 were expressed as an amino-terminal AviTag-TrxA-6His fusion protein (biotinylated p53) in E. coli. Each protein was purified from cell paste by affinity chromatography.Specifically, 10 uL of GST-hMDM2 was incubated with 10 ul of diluted compound (various concentrations, serially diluted) in 10% DMSO for 20 minutes at room temperature. 20 uL of biotinylated-p53 was added to the GST-hMDM2+compound mixture. | ChEMBL. | No reference |
IC50 (binding) | = 0.102 nM | BindingDB_Patents: Homogenous Time-Resolved Fluorescence Assay (HTRF). The standard assay conditions for the in vitro HTRF assay consisted of a 50 ul total reaction volume in black 384-well Costar polypropylene plates in 1PBS buffer pH 7.4, 1 mM DTT, 0.1% BSA, 2.5 nM GST-hMDM2 (aa 1-188), 5 nM biotinylated-p53 (aa 1-83), 1.8 nM SA-XLent (Cisbio; Bedford, Mass.), 0.6 nM anti-GST cryptate monoclonal antibody (Cisbio; Bedford, Mass.) and 200 mM KF. Amino acid residues 1-188 of human MDM2 were expressed as an amino-terminal glutathione S-transferase (GST) fusion protein (GST-hMDM2) in Escherichia coli. Residues 1-83 of human p53 were expressed as an amino-terminal AviTag-TrxA-6His fusion protein (biotinylated p53) in E. coli. Each protein was purified from cell paste by affinity chromatography.Specifically, 10 uL of GST-hMDM2 was incubated with 10 ul of diluted compound (various concentrations, serially diluted) in 10% DMSO for 20 minutes at room temperature. 20 uL of biotinylated-p53 was added to the GST-hMDM2+compound mixture. | ChEMBL. | No reference |
Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.