Detailed information for compound 408992

Basic information

Technical information
  • TDR Targets ID: 408992
  • Name: (5S)-N-[(2S,3R)-3-hydroxy-4-[(3-methoxyphenyl )sulfonyl-(thiophen-2-ylmethyl)amino]-1-pheny lbutan-2-yl]-2-oxo-3-phenyl-1,3-oxazolidine-5 -carboxamide
  • MW: 635.75 | Formula: C32H33N3O7S2
  • H donors: 2 H acceptors: 5 LogP: 4.27 Rotable bonds: 14
    Rule of 5 violations (Lipinski): 2
  • SMILES: COc1cccc(c1)S(=O)(=O)N(C[C@H]([C@@H](NC(=O)[C@@H]1CN(C(=O)O1)c1ccccc1)Cc1ccccc1)O)Cc1cccs1
  • InChi: 1S/C32H33N3O7S2/c1-41-25-14-8-16-27(19-25)44(39,40)34(20-26-15-9-17-43-26)21-29(36)28(18-23-10-4-2-5-11-23)33-31(37)30-22-35(32(38)42-30)24-12-6-3-7-13-24/h2-17,19,28-30,36H,18,20-22H2,1H3,(H,33,37)/t28-,29+,30-/m0/s1
  • InChiKey: LSEJXJJBPLLLBF-JBOQNHBVSA-N  


Substructure search Similarity search

Network

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Synonyms

  • (5S)-N-[(1S,2R)-1-benzyl-2-hydroxy-3-[(3-methoxyphenyl)sulfonyl-(2-thienylmethyl)amino]propyl]-2-oxo-3-phenyl-oxazolidine-5-carboxamide
  • (5S)-N-[(1S,2R)-1-benzyl-2-hydroxy-3-[(3-methoxyphenyl)sulfonyl-(2-thienylmethyl)amino]propyl]-2-oxo-3-phenyl-5-oxazolidinecarboxamide
  • (5S)-N-[(2S,3R)-3-hydroxy-4-[(3-methoxyphenyl)sulfonyl-(thiophen-2-ylmethyl)amino]-1-phenyl-butan-2-yl]-2-oxo-3-phenyl-1,3-oxazolidine-5-carboxamide
  • (5S)-N-[(1S,2R)-1-benzyl-2-hydroxy-3-[(3-methoxyphenyl)sulfonyl-(2-thenyl)amino]propyl]-2-keto-3-phenyl-oxazolidine-5-carboxamide
  • (5S)-N-[(1S,2R)-2-hydroxy-3-[(3-methoxyphenyl)sulfonyl-(2-thienylmethyl)amino]-1-(phenylmethyl)propyl]-2-oxo-3-phenyl-oxazolidine-5-carboxamide
  • (5S)-N-[(1S,2R)-2-hydroxy-3-[(3-methoxyphenyl)sulfonyl-(2-thienylmethyl)amino]-1-(phenylmethyl)propyl]-2-oxo-3-phenyl-5-oxazolidinecarboxamide
  • (5S)-N-[(1S,2R)-1-(benzyl)-2-hydroxy-3-[(3-methoxyphenyl)sulfonyl-(2-thienylmethyl)amino]propyl]-2-keto-3-phenyl-oxazolidine-5-carboxamide
  • 5-Oxazolidinecarboxamide, N-[(1S,2R)-2-hydroxy-3-[[(3-methoxyphenyl)sulfonyl](2-thienylmethyl)amino]-1-(phenylmethyl)propyl]-2-oxo-3-(phenyl)-, (5S)-
  • AIDS-417168
  • AIDS417168

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Human immunodeficiency virus 1 Human immunodeficiency virus type 1 protease Starlite/ChEMBL References

Predicted pathogen targets for this compound

By orthology
Species Potential target Known druggable target/s Ortholog Group
Schistosoma mansoni intracisternal A-particle retropepsin (A02 family) Get druggable targets OG5_131408 All targets in OG5_131408
By sequence similarity to non orthologous known druggable targets
Species Potential target Known druggable target Length Alignment span Identity
Entamoeba histolytica retroviral aspartyl protease domain-containing protein Human immunodeficiency virus type 1 protease   99 aa 103 aa 31.1 %
Mycobacterium leprae Hypothetical protein Human immunodeficiency virus type 1 protease   99 aa 86 aa 27.9 %
Trypanosoma brucei variant surface glycoprotein (VSG), putative Human immunodeficiency virus type 1 protease   99 aa 80 aa 27.5 %
Entamoeba histolytica retroviral aspartyl protease domain-containing protein Human immunodeficiency virus type 1 protease   99 aa 103 aa 31.1 %
Giardia lamblia DNA-directed RNA polymerase subunit D Human immunodeficiency virus type 1 protease   99 aa 90 aa 27.8 %
Candida albicans dethiobiotin synthetase Human immunodeficiency virus type 1 protease   99 aa 90 aa 22.2 %
Echinococcus multilocularis Chromobox protein 3 Human immunodeficiency virus type 1 protease   99 aa 95 aa 28.4 %
Candida albicans dethiobiotin synthetase Human immunodeficiency virus type 1 protease   99 aa 90 aa 22.2 %
Obtained from network model

Ranking Plot

Putative Targets List

Species Potential target Raw Global Species
Trypanosoma cruzi Eukaryotic initiation factor 4A-1 0.0709 0.3453 0.5
Trypanosoma cruzi Eukaryotic initiation factor 4A-1 0.0709 0.3453 0.5
Loa Loa (eye worm) hypothetical protein 0.0709 0.3453 0.5
Echinococcus multilocularis eukaryotic initiation factor 4A III 0.0709 0.3453 0.5
Leishmania major eukaryotic initiation factor 4a, putative 0.0709 0.3453 0.5
Echinococcus granulosus eukaryotic initiation factor 4A 0.0709 0.3453 0.5
Plasmodium falciparum eukaryotic initiation factor 4A 0.0709 0.3453 0.5
Leishmania major eukaryotic initiation factor 4a, putative 0.0709 0.3453 0.5
Giardia lamblia Translation initiation factor eIF-4A, putative 0.0709 0.3453 0.5
Entamoeba histolytica DEAD/DEAH box helicase, putative 0.0709 0.3453 0.5
Trypanosoma brucei Eukaryotic initiation factor 4A-1 0.0709 0.3453 0.5
Echinococcus multilocularis eukaryotic initiation factor 4A 0.0709 0.3453 0.5
Schistosoma mansoni DEAD box ATP-dependent RNA helicase 0.0709 0.3453 0.3453
Echinococcus granulosus eukaryotic initiation factor 4A III 0.0709 0.3453 0.5
Plasmodium vivax RNA helicase-1, putative 0.0709 0.3453 0.5
Trichomonas vaginalis DEAD box ATP-dependent RNA helicase, putative 0.0709 0.3453 0.5
Trichomonas vaginalis DEAD box ATP-dependent RNA helicase, putative 0.0709 0.3453 0.5
Onchocerca volvulus Eukaryotic initiation factor 4A homolog 0.0709 0.3453 0.5
Trichomonas vaginalis DEAD box ATP-dependent RNA helicase, putative 0.0709 0.3453 0.5
Toxoplasma gondii eukaryotic initiation factor-4A, putative 0.0709 0.3453 0.5
Treponema pallidum ATP-dependent RNA helicase 0.0709 0.3453 0.5
Brugia malayi eukaryotic initiation factor 4A 0.0709 0.3453 0.5
Schistosoma mansoni DEAD box ATP-dependent RNA helicase 0.0709 0.3453 0.3453
Mycobacterium tuberculosis Probable cold-shock DeaD-box protein A homolog DeaD (ATP-dependent RNA helicase dead homolog) 0.0709 0.3453 0.5

Activities

Activity type Activity value Assay description Source Reference
Ki (binding) = 238.7 nM Inhibition of wild type HIV1 protease Q7K mutant ChEMBL. 17149864
Ki (binding) = 238.7 nM Inhibition of wild type HIV1 protease Q7K mutant ChEMBL. 17149864

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

1 literature reference was collected for this gene.

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