TDR Targets

Basic information

Technical information

TDR Targets ID: 254070
Name: 3-chloro-N-[2-[(5-chloropyridin-2-yl)carbamoy l]-4-methylphenyl]-1-benzothiophene-2-carboxa mide
MW: 456.344 | Formula: C22H15Cl2N3O2S
H donors: 2 H acceptors: 3 LogP: 6.38 Rotable bonds: 6
Rule of 5 violations (Lipinski): 1
SMILES: Clc1ccc(nc1)NC(=O)c1cc(C)ccc1NC(=O)c1sc2c(c1Cl)cccc2
InChi: 1S/C22H15Cl2N3O2S/c1-12-6-8-16(15(10-12)21(28)27-18-9-7-13(23)11-25-18)26-22(29)20-19(24)14-4-2-3-5-17(14)30-20/h2-11H,1H3,(H,26,29)(H,25,27,28)
InChiKey: WQKMHPRAHCQDBZ-UHFFFAOYSA-N

Network

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Target Layer

Model Organisms

Species	Viewmode
Arabidopsis thaliana
Caenorhabditis elegans
Dictyostelium discoideum
Drosophila melanogaster
Escherichia coli
Homo sapiens
Mus musculus
Oryza sativa
Saccharomyces cerevisiae
Schmidtea mediterranea
Other organisms

TDR Pathogens:

Species	Viewmode
Brugia malayi
Chlamydia trachomatis
Echinococcus granulosus
Entamoeba histolytica
Echinococcus multilocularis
Giardia lamblia
Leishmania major
Loa Loa (eye worm)
Mycobacterium leprae
Mycobacterium tuberculosis
Mycobacterium ulcerans
Onchocerca volvulus
Plasmodium falciparum
Plasmodium vivax
Schistosoma mansoni
Trypanosoma brucei
Trypanosoma cruzi
Toxoplasma gondii
Treponema pallidum
Trichomonas vaginalis
Wolbachia endosymbiont of Brugia malayi

Other Pathogens:

Species	Viewmode
Babesia bovis
Candida albicans
Cryptosporidium hominis
Cryptosporidium parvum
Leishmania braziliensis
Leishmania donovani
Leishmania infantum
Leishmania mexicana
Neospora caninum
Plasmodium berghei
Plasmodium knowlesi
Plasmodium yoelii
Schistosoma japonicum
Trypanosoma brucei gambiense
Trypanosoma congolense
Theileria parva

Compound Layer

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Clustering layers

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Synonyms

3-chloro-N-[2-[(5-chloro-2-pyridyl)carbamoyl]-4-methyl-phenyl]benzothiophene-2-carboxamide
3-chloro-N-[2-[[(5-chloro-2-pyridyl)amino]-oxomethyl]-4-methylphenyl]-2-benzothiophenecarboxamide
3-chloro-N-[2-[(5-chloropyridin-2-yl)carbamoyl]-4-methyl-phenyl]-1-benzothiophene-2-carboxamide

Targets

Known targets for this compound

Species	Target name	Source	Bibliographic reference
Homo sapiens	protease, serine, 2 (trypsin 2)		References
Homo sapiens	protease, serine, 1 (trypsin 1)		References
Homo sapiens	coagulation factor II (thrombin)	Starlite/ChEMBL	References
Homo sapiens	protease, serine, 3	Starlite/ChEMBL	References
Homo sapiens	coagulation factor X	Starlite/ChEMBL	References

Predicted pathogen targets for this compound

By orthology

Species	Potential target	Known druggable target/s	Ortholog Group
Onchocerca volvulus		Get druggable targets OG5_126639	All targets in OG5_126639
Schistosoma mansoni	subfamily S1A unassigned peptidase (S01 family)	Get druggable targets OG5_126639	All targets in OG5_126639
Schistosoma japonicum	ko:K09639 transmembrane protease, serine 8, putative	Get druggable targets OG5_126639	All targets in OG5_126639
Onchocerca volvulus		Get druggable targets OG5_126639	All targets in OG5_126639
Brugia malayi	Trypsin family protein	Get druggable targets OG5_126639	All targets in OG5_126639
Schistosoma japonicum	ko:K09639 transmembrane protease, serine 8, putative	Get druggable targets OG5_126639	All targets in OG5_126639
Loa Loa (eye worm)	hypothetical protein	Get druggable targets OG5_126639	All targets in OG5_126639
Schistosoma mansoni	subfamily S1A unassigned peptidase (S01 family)	Get druggable targets OG5_126639	All targets in OG5_126639
Loa Loa (eye worm)	hypothetical protein	Get druggable targets OG5_126639	All targets in OG5_126639

By sequence similarity to non orthologous known druggable targets

Species	Potential target	Known druggable target	Length	Alignment span	Identity
Brugia malayi	Trypsin family protein	protease, serine, 1 (trypsin 1)	247 aa	287 aa	21.6 %
Schistosoma mansoni	cercarial elastase (S01 family)	protease, serine, 3	261 aa	234 aa	25.2 %
Schistosoma mansoni	cercarial elastase (S01 family)	protease, serine, 2 (trypsin 2)	247 aa	240 aa	25.8 %

Ranking Plot

Putative Targets List

Species	Potential target	Raw	Global	Species
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0072	0.0138	0.3062
Trypanosoma brucei	phosphatidylinositol 3-related kinase, putative	0.0128	0.0449	1
Loa Loa (eye worm)	hypothetical protein	0.0056	0.0046	0.0276
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trichomonas vaginalis	conserved hypothetical protein	0.0056	0.0046	0.1025
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Schistosoma mansoni	ataxia telangiectasia mutated (atm)	0.0072	0.0138	0.0563
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0072	0.0138	0.3062
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Echinococcus multilocularis	FKBP12 rapamycin complex associated protein	0.0128	0.0449	0.0405
Schistosoma mansoni	ataxia telangiectasia mutated (atm)-related	0.0128	0.0449	0.2481
Loa Loa (eye worm)	hypothetical protein	0.0347	0.1672	1
Trypanosoma cruzi	Phosphatidylinositol 3-kinase tor1	0.0128	0.0449	0.1352
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Brugia malayi	Phosphatidylinositol 3- and 4-kinase family protein	0.0072	0.0138	0.0563
Brugia malayi	Phosphatidylinositol 3- and 4-kinase family protein	0.0128	0.0449	0.2481
Trypanosoma cruzi	phosphatidylinositol kinase related protein, putative	0.0072	0.0138	0.0414
Entamoeba histolytica	FKBP-rapamycin associated protein (FRAP), putative	0.0128	0.0449	1
Toxoplasma gondii	non-specific serine/threonine protein kinase	0.0081	0.0184	0.1478
Trypanosoma brucei	target of rapamycin kinase 3, putative	0.0128	0.0449	1
Leishmania major	hypothetical protein, conserved	0.0668	0.3462	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0072	0.0138	0.3062
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trypanosoma brucei	Phosphatidylinositol 3-kinase tor1	0.0128	0.0449	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Echinococcus granulosus	phosphatidylinositol 3 and 4 kinase	0.0128	0.0449	0.0405
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0072	0.0138	0.3062
Echinococcus granulosus	FKBP12 rapamycin complex associated protein	0.0128	0.0449	0.0405
Loa Loa (eye worm)	hypothetical protein	0.0072	0.0138	0.0823
Echinococcus multilocularis	DNA dependent protein kinase catalytic subunit	0.184	1	1
Trypanosoma cruzi	target of rapamycin kinase 3	0.0128	0.0449	0.1352
Trypanosoma brucei	phosphatidylinositol 3-kinase, putative	0.0128	0.0449	1
Trypanosoma brucei	phosphatidylinositol 4-kinase, putative	0.0128	0.0449	1
Trypanosoma brucei	FAT domain/Rapamycin binding domain/Phosphatidylinositol 3- and 4-kinase, putative	0.0081	0.0184	0.1478
Schistosoma mansoni	phosphatidylinositol 3-and 4-kinase	0.0128	0.0449	0.2481
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Brugia malayi	Phosphatidylinositol 3- and 4-kinase family protein	0.0072	0.0138	0.0563
Schistosoma mansoni	subfamily S1A unassigned peptidase (S01 family)	0.0347	0.1672	1
Loa Loa (eye worm)	hypothetical protein	0.0081	0.0184	0.1099
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0072	0.0138	0.3062
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Giardia lamblia	GTOR	0.0128	0.0449	0.5
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trypanosoma cruzi	Phosphatidylinositol 3-kinase tor2	0.0128	0.0449	0.1352
Echinococcus multilocularis	serine protein kinase ATM	0.0072	0.0138	0.0092
Echinococcus multilocularis	phosphatidylinositol 3 and 4 kinase	0.0128	0.0449	0.0405
Loa Loa (eye worm)	phosphatidylinositol 3	0.0128	0.0449	0.2688
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0081	0.0184	0.4087
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trypanosoma cruzi	phosphatidylinositol 3-related kinase, putative	0.0128	0.0449	0.1352
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trichomonas vaginalis	conserved hypothetical protein	0.0081	0.0184	0.4087
Trypanosoma cruzi	hypothetical protein, conserved	0.0644	0.3325	1
Brugia malayi	Trypsin family protein	0.0347	0.1672	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0072	0.0138	0.3062
Entamoeba histolytica	phosphatidylinositol3-kinaseTor2, putative	0.0128	0.0449	1
Echinococcus granulosus	serine protein kinase ATM	0.0072	0.0138	0.0092
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trypanosoma cruzi	phosphatidylinositol 3-related kinase, putative	0.0128	0.0449	0.1352
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0072	0.0138	0.3062
Trypanosoma cruzi	phosphatidylinositol 3-kinase, putative	0.0072	0.0138	0.0414
Loa Loa (eye worm)	hypothetical protein	0.0347	0.1672	1
Onchocerca volvulus		0.0347	0.1672	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Toxoplasma gondii	target of rapamycin (TOR), putative	0.0128	0.0449	1
Schistosoma mansoni	fkbp-rapamycin associated protein	0.0072	0.0138	0.0563
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0072	0.0138	0.3062
Brugia malayi	Phosphatidylinositol 3- and 4-kinase family protein	0.0128	0.0449	0.2481
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0128	0.0449	1
Schistosoma mansoni	subfamily S1A unassigned peptidase (S01 family)	0.0347	0.1672	1
Echinococcus multilocularis	serine:threonine protein kinase SMG1	0.0072	0.0138	0.0092
Echinococcus granulosus	serine:threonine protein kinase SMG1	0.0072	0.0138	0.0092
Loa Loa (eye worm)	phosphatidylinositol 3	0.0128	0.0449	0.2688

Activities

Activity type	Activity value	Assay description	Source	Reference
Ki (binding)	= 2.3 nM	Inhibition constant against human factor Xa	ChEMBL.	12565961
Ki (binding)	> 5000 nM	Inhibition constant of the compound against human thrombin	ChEMBL.	12565961
Ki (binding)	> 5000 nM	Inhibition constant of the compound against bovine trypsin	ChEMBL.	12565961
Ki app (binding)	= 2.3 nM	Inhibition constant against human factor Xa	ChEMBL.	12565961
Ki app (binding)	> 5000 nM	Inhibition constant of the compound against human thrombin	ChEMBL.	12565961
Ki app (binding)	> 5000 nM	Inhibition constant of the compound against bovine trypsin	ChEMBL.	12565961

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

ChEMBL: CHEMBL146207
PubChem: 18376800

Bibliographic References

1 literature reference was collected for this gene.

If you have references for this compound, please enter them in a user comment (below) or Contact us.

Detailed information for compound 254070