Detailed information for compound 375951

Basic information

Technical information
  • TDR Targets ID: 375951
  • Name: 4-amino-5-hydroxy-1-[(2R,4S,5R)-4-hydroxy-5-( hydroxymethyl)oxolan-2-yl]pyrimidin-2-one
  • MW: 243.217 | Formula: C9H13N3O5
  • H donors: 4 H acceptors: 4 LogP: -1.8 Rotable bonds: 2
    Rule of 5 violations (Lipinski): 1
  • SMILES: OC[C@H]1O[C@H](C[C@@H]1O)n1cc(O)c(nc1=O)N
  • InChi: 1S/C9H13N3O5/c10-8-5(15)2-12(9(16)11-8)7-1-4(14)6(3-13)17-7/h2,4,6-7,13-15H,1,3H2,(H2,10,11,16)/t4-,6+,7+/m0/s1
  • InChiKey: CKZJTNZSBMVFSU-UBKIQSJTSA-N  


Substructure search Similarity search

Network

Hover on a compound node to display the structore

Synonyms

  • 4-amino-5-hydroxy-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrimidin-2-one
  • 4-amino-5-hydroxy-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)-2-tetrahydrofuranyl]-2-pyrimidinone
  • 4-azanyl-5-hydroxy-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one
  • 4-amino-5-hydroxy-1-[(2R,4S,5R)-4-hydroxy-5-methylol-tetrahydrofuran-2-yl]pyrimidin-2-one
  • 5-hydroxy-2'-deoxycytidine
  • 52278-77-0
  • 5-Hydroxydeoxycytidine
  • 5-Hydroxydeoxycytidine'
  • 5-OH-dC
  • 5-OHdC
  • AIDS-088694
  • AIDS088694

Targets

Known targets for this compound

No curated genes were found associated with this compound

Predicted pathogen targets for this compound

By orthology
No druggable targets predicted by orthology data
By sequence similarity to non orthologous known druggable targets
No druggable targets predicted by sequence similarity
Obtained from network model

Ranking Plot

Putative Targets List

Species Potential target Raw Global Species
Mycobacterium tuberculosis Probable esterase/lipase LipP 0.0037 0.0828 0.0809
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Toxoplasma gondii pyruvate kinase PyK1 0.0034 0.0697 0.8417
Echinococcus multilocularis non capsid protein NS 1 0.0105 0.3771 0.4385
Mycobacterium ulcerans hypothetical protein 0.0037 0.0828 1
Schistosoma mansoni histone-lysine n-methyltransferase setb1 0.0032 0.0618 0.0697
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Echinococcus granulosus guanine nucleotide binding protein Gs subunit 0.0188 0.7284 1
Echinococcus granulosus chromobox protein 1 0.0071 0.2309 0.317
Schistosoma mansoni histone-lysine n-methyltransferase setb1 0.0032 0.0618 0.0697
Trichomonas vaginalis conserved hypothetical protein 0.004 0.0972 0.0892
Echinococcus granulosus chromobox protein 1 0.0071 0.2309 0.317
Mycobacterium tuberculosis Probable pyruvate kinase PykA 0.0034 0.0697 0.0665
Schistosoma mansoni histone-lysine n-methyltransferase setb1 0.0032 0.0618 0.0697
Trichomonas vaginalis conserved hypothetical protein 0.0028 0.0474 0.039
Mycobacterium tuberculosis Probable conserved lipoprotein 0.0037 0.0828 0.0809
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Onchocerca volvulus Heterochromatin protein 1 homolog 0.0043 0.1101 0.053
Schistosoma mansoni pyruvate kinase 0.0034 0.0697 0.0785
Trichomonas vaginalis conserved hypothetical protein 0.004 0.0972 0.0892
Trypanosoma cruzi pyruvate kinase 2, putative 0.0034 0.0697 0.823
Mycobacterium tuberculosis Probable hydrolase 0.0037 0.0828 0.0809
Loa Loa (eye worm) hypothetical protein 0.0037 0.0828 0.0843
Onchocerca volvulus Pyruvate kinase homolog 0.0034 0.0697 0.01
Loa Loa (eye worm) beta-LACTamase domain containing family member 0.0037 0.0828 0.0843
Onchocerca volvulus Pyruvate kinase homolog 0.0034 0.0697 0.01
Mycobacterium tuberculosis Probable esterase LipL 0.0037 0.0828 0.0809
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Toxoplasma gondii histone lysine methyltransferase SET/SUV39 0.0032 0.0618 0.747
Schistosoma mansoni gabp alpha 0.0074 0.2429 0.2739
Trichomonas vaginalis chromobox protein, putative 0.0071 0.2309 0.2242
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Echinococcus granulosus beta LACTamase domain containing family member 0.0037 0.0828 0.1136
Loa Loa (eye worm) hypothetical protein 0.0037 0.0828 0.0843
Trypanosoma cruzi hypothetical protein, conserved 0.0037 0.0828 1
Echinococcus granulosus pyruvate kinase 0.0034 0.0697 0.0956
Trypanosoma cruzi pyruvate kinase 2, putative 0.0034 0.0697 0.823
Schistosoma mansoni hypothetical protein 0.0105 0.3771 0.4251
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Mycobacterium ulcerans lipase LipD 0.0037 0.0828 1
Mycobacterium leprae conserved hypothetical protein 0.0037 0.0828 1
Plasmodium vivax AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase), putative 0.0019 0.0087 0.1052
Mycobacterium tuberculosis Probable lipase LipE 0.0037 0.0828 0.0809
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Mycobacterium tuberculosis Conserved protein 0.0037 0.0828 0.0809
Plasmodium vivax hypothetical protein, conserved 0.0037 0.0828 1
Trichomonas vaginalis D-aminoacylase, putative 0.0037 0.0828 0.0747
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Trichomonas vaginalis set domain proteins, putative 0.0251 1 1
Leishmania major pyruvate kinase 0.0034 0.0697 0.823
Echinococcus multilocularis DNA (apurinic or apyrimidinic site) lyase 0.0019 0.0087 0.0101
Loa Loa (eye worm) D-ets-4 DNA binding domain-containing protein 0.0074 0.2429 0.2667
Loa Loa (eye worm) hypothetical protein 0.0037 0.0828 0.0843
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Trichomonas vaginalis esterase, putative 0.0037 0.0828 0.0747
Brugia malayi beta-lactamase family protein 0.0037 0.0828 0.0843
Trichomonas vaginalis D-aminoacylase, putative 0.0037 0.0828 0.0747
Loa Loa (eye worm) hypothetical protein 0.0032 0.0618 0.0605
Echinococcus multilocularis guanine nucleotide binding protein G(s) subunit 0.0188 0.7284 0.847
Trypanosoma brucei pyruvate kinase 1 0.0034 0.0697 0.823
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Loa Loa (eye worm) fli-1 protein 0.0225 0.8871 1
Trichomonas vaginalis pyruvate kinase, putative 0.0034 0.0697 0.0615
Schistosoma mansoni ap endonuclease 0.0019 0.0087 0.0098
Mycobacterium tuberculosis Possible conserved lipoprotein LpqK 0.0037 0.0828 0.0809
Echinococcus granulosus geminin 0.018 0.6944 0.9534
Echinococcus multilocularis GA binding protein alpha chain 0.0074 0.2429 0.2825
Trichomonas vaginalis chromobox protein, putative 0.0071 0.2309 0.2242
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) 0.0188 0.7284 0.8211
Loa Loa (eye worm) hypothetical protein 0.0034 0.0697 0.0694
Entamoeba histolytica pyruvate kinase, putative 0.0023 0.0264 1
Loa Loa (eye worm) hypothetical protein 0.0037 0.0828 0.0843
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) 0.0188 0.7284 0.8211
Brugia malayi Pyruvate kinase, M2 isozyme 0.0034 0.0697 0.0694
Toxoplasma gondii exonuclease III APE 0.0019 0.0087 0.1052
Brugia malayi chromobox protein homolog 3 0.004 0.0972 0.1007
Onchocerca volvulus 0.0043 0.1116 0.0546
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Brugia malayi Ets-domain containing protein 0.0074 0.2429 0.2667
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Chlamydia trachomatis pyruvate kinase 0.0034 0.0697 0.5
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Loa Loa (eye worm) pre-SET domain-containing protein family protein 0.0221 0.8697 0.9802
Plasmodium falciparum pyruvate kinase 0.0034 0.0697 1
Brugia malayi Fli-1 protein 0.0225 0.8871 1
Loa Loa (eye worm) hypothetical protein 0.004 0.0972 0.1007
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Giardia lamblia Endonuclease/Exonuclease/phosphatase 0.0019 0.0087 0.125
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Trichomonas vaginalis chromobox protein, putative 0.0043 0.1101 0.1023
Echinococcus multilocularis non capsid protein NS 1 0.0105 0.3771 0.4385
Echinococcus multilocularis pyruvate kinase 0.0034 0.0697 0.081
Echinococcus multilocularis beta LACTamase domain containing family member 0.0037 0.0828 0.0962
Brugia malayi Pre-SET motif family protein 0.0221 0.8697 0.9802
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Echinococcus granulosus histone lysine methyltransferase setb 0.0032 0.0618 0.0849
Echinococcus granulosus 5'partial|histone lysine N methyltransferase SETDB2 0.0031 0.0568 0.078
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Echinococcus multilocularis non capsid protein NS 1 0.0105 0.3771 0.4385
Loa Loa (eye worm) hypothetical protein 0.0063 0.197 0.2144
Echinococcus multilocularis non capsid protein NS 1 0.0105 0.3771 0.4385
Echinococcus multilocularis chromobox protein 1 0.0071 0.2309 0.2685
Schistosoma mansoni hypothetical protein 0.018 0.6944 0.7828
Loa Loa (eye worm) hypothetical protein 0.0037 0.0828 0.0843
Loa Loa (eye worm) heterochromatin protein 1 0.0071 0.2309 0.253
Loa Loa (eye worm) beta-lactamase 0.0037 0.0828 0.0843
Loa Loa (eye worm) hypothetical protein 0.0023 0.0264 0.0201
Onchocerca volvulus 0.0037 0.0828 0.0239
Trypanosoma brucei hypothetical protein, conserved 0.0037 0.0828 1
Echinococcus granulosus pyruvate kinase 0.0034 0.0697 0.0956
Echinococcus multilocularis histone lysine N methyltransferase SETMAR 0.0032 0.0618 0.0719
Echinococcus multilocularis chromobox protein 1 0.0071 0.2309 0.2685
Trypanosoma cruzi hypothetical protein, conserved 0.0037 0.0828 1
Echinococcus granulosus 5'partial|3'partial|non capsid protein NS 1 0.0105 0.3771 0.5177
Onchocerca volvulus 0.0037 0.0828 0.0239
Echinococcus multilocularis geminin 0.018 0.6944 0.8075
Loa Loa (eye worm) hypothetical protein 0.0031 0.0603 0.0587
Loa Loa (eye worm) pyruvate kinase 0.0034 0.0697 0.0694
Brugia malayi beta-lactamase family protein 0.0037 0.0828 0.0843
Echinococcus granulosus GA binding protein alpha chain 0.0074 0.2429 0.3335
Brugia malayi Pyruvate kinase, muscle isozyme 0.0034 0.0697 0.0694
Trichomonas vaginalis D-aminoacylase, putative 0.0037 0.0828 0.0747
Loa Loa (eye worm) pyruvate kinase 0.0034 0.0697 0.0694
Mycobacterium ulcerans pyruvate kinase 0.0034 0.0697 0.823
Onchocerca volvulus Heterochromatin protein 1 homolog 0.004 0.0972 0.0392
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Echinococcus multilocularis transfer RNA-Gly 0.0219 0.86 1
Toxoplasma gondii ABC1 family protein 0.0037 0.0828 1
Mycobacterium leprae Probable lipase LipE 0.0037 0.0828 1
Trichomonas vaginalis penicillin-binding protein, putative 0.0037 0.0828 0.0747
Echinococcus granulosus DNA apurinic or apyrimidinic site lyase 0.0019 0.0087 0.012
Trichomonas vaginalis conserved hypothetical protein 0.0028 0.0474 0.039
Mycobacterium tuberculosis Possible penicillin-binding protein 0.0234 0.9246 1
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Brugia malayi Heterochromatin protein 1 0.0071 0.2309 0.253
Onchocerca volvulus 0.0037 0.0828 0.0239
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Wolbachia endosymbiont of Brugia malayi exonuclease III 0.0019 0.0087 0.5
Trichomonas vaginalis penicillin-binding protein, putative 0.0037 0.0828 0.0747
Echinococcus multilocularis transfer RNA-Trp 0.0219 0.86 1
Loa Loa (eye worm) GTP-binding regulatory protein Gs alpha-S chain 0.0188 0.7284 0.8193
Brugia malayi Pre-SET motif family protein 0.0032 0.0618 0.0605
Echinococcus multilocularis transfer RNA-Gly 0.0219 0.86 1
Trichomonas vaginalis pyruvate kinase, putative 0.0034 0.0697 0.0615
Echinococcus multilocularis histone lysine methyltransferase setb histone lysine methyltransferase eggless 0.0032 0.0618 0.0719
Onchocerca volvulus Pyruvate kinase homolog 0.0034 0.0697 0.01
Schistosoma mansoni ap endonuclease 0.0019 0.0087 0.0098
Brugia malayi beta-lactamase 0.0037 0.0828 0.0843
Loa Loa (eye worm) pyruvate kinase-PB 0.0023 0.0264 0.0201
Loa Loa (eye worm) pyruvate kinase 0.0034 0.0697 0.0694
Echinococcus granulosus guanine nucleotide binding protein Gs subunit 0.0188 0.7284 1
Schistosoma mansoni family S12 unassigned peptidase (S12 family) 0.0037 0.0828 0.0933
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Echinococcus multilocularis pyruvate kinase 0.0026 0.0395 0.0459
Trichomonas vaginalis chromobox protein, putative 0.0043 0.1101 0.1023
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Plasmodium falciparum AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase), putative 0.0019 0.0087 0.125
Brugia malayi Ets-domain containing protein 0.0074 0.2429 0.2667
Mycobacterium ulcerans fusion of enoyl-CoA hydratase, EchA21 and lipase, LipE 0.0037 0.0828 1
Mycobacterium ulcerans esterase/lipase LipP 0.0037 0.0828 1
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Schistosoma mansoni chromobox protein 0.0071 0.2309 0.2603
Schistosoma mansoni chromobox protein 0.0071 0.2309 0.2603
Echinococcus multilocularis pyruvate kinase 0.0034 0.0697 0.081
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) 0.0188 0.7284 0.8211
Schistosoma mansoni histone-lysine n-methyltransferase suv9 0.0043 0.1116 0.1259
Leishmania major hypothetical protein, conserved 0.0037 0.0828 1
Trypanosoma brucei pyruvate kinase 1, putative 0.0034 0.0697 0.823
Schistosoma mansoni pyruvate kinase 0.0034 0.0697 0.0785
Schistosoma mansoni hypothetical protein 0.018 0.6944 0.7828
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Plasmodium vivax SET domain protein, putative 0.0032 0.0618 0.747
Giardia lamblia Pyruvate kinase 0.0034 0.0697 1
Mycobacterium tuberculosis Conserved protein 0.0037 0.0828 0.0809
Leishmania major pyruvate kinase 0.0034 0.0697 0.823
Echinococcus multilocularis guanine nucleotide binding protein G(s) subunit 0.0188 0.7284 0.847
Treponema pallidum exodeoxyribonuclease (exoA) 0.0019 0.0087 0.5
Schistosoma mansoni ets-related 0.0225 0.8871 1
Echinococcus multilocularis transfer RNA-Gly 0.0219 0.86 1
Brugia malayi GTP-binding regulatory protein Gs alpha-S chain, putative 0.0188 0.7284 0.8193
Loa Loa (eye worm) hypothetical protein 0.0037 0.0828 0.0843
Echinococcus multilocularis non capsid protein NS 1 0.0219 0.86 1
Mycobacterium ulcerans beta-lactamase 0.0037 0.0828 1
Schistosoma mansoni family S12 unassigned peptidase (S12 family) 0.0037 0.0828 0.0933
Plasmodium vivax pyruvate kinase, putative 0.0034 0.0697 0.8417
Mycobacterium tuberculosis Conserved protein 0.0037 0.0828 0.0809
Mycobacterium tuberculosis Probable lipase LipD 0.0037 0.0828 0.0809
Brugia malayi Hypothetical 52.5 kDa protein ZK945.1 in chromosome II, putative 0.0037 0.0828 0.0843

Activities

Activity type Activity value Assay description Source Reference
Activity (functional) 0 Antiviral activity against poliovirus in HeLa S3 cells assessed as reduction in viral titer ChEMBL. 17034123
Activity (functional) 0 Antiviral activity against coxsackievirus B3 in HeLa S3 cells assessed as reduction in viral titer ChEMBL. 17034123
Activity (functional) = 82 % Viability of human HeLa S3 cells ChEMBL. 17034123
Activity (functional) = 82 % Viability of human HeLa S3 cells ChEMBL. 17034123

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

1 literature reference was collected for this gene.

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